Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RDH11 (retinol dehydrogenase 11 (all-trans/9-cis/11-cis))

Identity

Other namesARSDR1
CGI82
HCBP12
MDT1
PSDR1
RALR1
SCALD
SDR7C1
HGNC (Hugo) RDH11
LocusID (NCBI) 51109
Location 14q24.1
Location_base_pair Starts at 68143519 and ends at 68162510 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RDH11   17964
Entrez_Gene (NCBI)RDH11  51109  retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Cards
GeneCards (Weizmann)RDH11
Ensembl (Hinxton)ENSG00000072042 [Gene_View]  chr14:68143519-68162510 [Contig_View]  RDH11 [Vega]
AceView (NCBI)RDH11
Genatlas (Paris)RDH11
SOURCE (Stanford)NM_001252650 NM_016026
Genomic and cartography
GoldenPath (UCSC)RDH11  -  14q24.1   chr14:68143519-68162510 -  14q24.1   [Description]    (hg19-Feb_2009)
EnsemblRDH11 - 14q24.1 [CytoView]
Mapping of homologs : NCBIRDH11 [Mapview]
OMIM607849   
Gene and transcription
Genbank (Entrez)AB209223 AF151840 AF167438 AF395068 AI382141
RefSeq transcript (SRS)NM_001252650 NM_016026
RefSeq transcript (Entrez)NM_001252650 NM_016026
RefSeq genomic (SRS)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838112 NW_004078079
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838112 NW_004078079
Consensus coding sequences : CCDS (NCBI)RDH11
Cluster EST : UnigeneHs.719925 [ SRS ] Hs.719925 [ NCBI ]
CGAP (NCI)Hs.719925
Alternative Splicing : Fast-db (Paris)GSHG0009439
Alternative Splicing GalleryENSG00000072042
Gene ExpressionRDH11 [ NCBI-GEO ]   RDH11 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC12 (SRS) Q8TC12 (Uniprot)
NextProtQ8TC12
With graphics : InterProQ8TC12
Splice isoforms : SwissVarQ8TC12(Swissvar)
Domaine pattern : Prosite (SRS)ADH_SHORT (PS00061)   
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (SRS)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom   
Domains : Interpro (EBI)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom   
Related proteins : CluSTrQ8TC12
Domain families : Pfam (SRS)adh_short (PF00106)   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
DMDM51109
Blocks (Seattle)Q8TC12
Human Protein AtlasENSG00000072042
HPRD09707
IPIIPI00339384   IPI00339385   IPI00910248   IPI00555948   IPI01025768   IPI01026108   IPI01026000   IPI01025203   IPI01025555   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC12
IntAct (EBI)Q8TC12
FunCoupENSG00000072042
REACTOMERDH11
Protein Interaction Database51109
BioGRIDRDH11
InParanoidQ8TC12
Interologous Interaction database Q8TC12
IntegromeDBRDH11
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RDH11
SNP (GeneSNP Utah)RDH11
SNP : HGBaseRDH11
Genetic variants : HAPMAPRDH11
Somatic Mutations in Cancer : COSMICRDH11 
CONAN: Copy Number AnalysisRDH11 
Mutations and Diseases : HGMDRDH11
OMIM607849   
GENETests607849   
Disease Genetic AssociationRDH11
Huge Navigator RDH11 [HugePedia]  RDH11 [HugeCancerGEM]
Genomic VariantsRDH11  RDH11 [DGVbeta]
snp3D : Map Gene to Disease51109
General knowledge
Homologs : HomoloGeneRDH11
Homology/Alignments : Family Browser (UCSC)RDH11
Phylogenetic Trees/Animal Genes : TreeFamRDH11
Catalytic activity : Enzyme1.1.1.300 [ Enzyme-Expasy ]   1.1.1.300 [ Enzyme-SRS ]   1.1.1.300 [ IntEnz-EBI ]   1.1.1.300 [ BRENDA ]   1.1.1.300 [ KEGG ]   
Chemical/Protein Interactions : CTD51109
Chemical/Pharm GKB GenePA134981588
Clinical trialRDH11
Cancer Resource (Charite)ENSG00000072042
Ontology : AmiGOnucleotide binding  retinoid metabolic process  photoreceptor inner segment  retinol dehydrogenase activity  intracellular  endoplasmic reticulum membrane  steroid metabolic process  integral to membrane  adaptation of rhodopsin mediated signaling  retinol metabolic process  retinal metabolic process  small molecule metabolic process  NADP-retinol dehydrogenase activity  
Ontology : EGO-EBInucleotide binding  retinoid metabolic process  photoreceptor inner segment  retinol dehydrogenase activity  intracellular  endoplasmic reticulum membrane  steroid metabolic process  integral to membrane  adaptation of rhodopsin mediated signaling  retinol metabolic process  retinal metabolic process  small molecule metabolic process  NADP-retinol dehydrogenase activity  
Pathways : KEGGTetrachloroethene degradationLinoleic acid metabolismNucleotide sugars metabolismButanoate metabolismGlycine, serine and threonine metabolismLysine degradationFructose and mannose metabolismGlycerophospholipid metabolismBile acid biosynthesisBisphenol A degradationAscorbate and aldarate metabolismGalactose metabolism
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
PubGeneRDH11
iHOPRDH11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:41 CEST 2013
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