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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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RDH11 (retinol dehydrogenase 11 (all-trans/9-cis/11-cis))

Identity

Other namesARSDR1
CGI82
HCBP12
MDT1
PSDR1
RALR1
SCALD
SDR7C1
HGNC (Hugo) RDH11
LocusID (NCBI) 51109
Location 14q24.1
Location_base_pair Starts at 68143519 and ends at 68162510 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RDH11   17964
Cards
Entrez_Gene (NCBI)RDH11  51109  retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
GeneCards (Weizmann)RDH11
Ensembl hg19 (Hinxton)ENSG00000072042 [Gene_View]  chr14:68143519-68162510 [Contig_View]  RDH11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000072042 [Gene_View]  chr14:68143519-68162510 [Contig_View]  RDH11 [Vega]
ICGC DataPortalENSG00000072042
cBioPortalRDH11
AceView (NCBI)RDH11
Genatlas (Paris)RDH11
WikiGenes51109
SOURCE (Princeton)RDH11
Genomic and cartography
GoldenPath hg19 (UCSC)RDH11  -     chr14:68143519-68162510 -  14q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RDH11  -     14q24.1   [Description]    (hg38-Dec_2013)
EnsemblRDH11 - 14q24.1 [CytoView hg19]  RDH11 - 14q24.1 [CytoView hg38]
Mapping of homologs : NCBIRDH11 [Mapview hg19]  RDH11 [Mapview hg38]
OMIM607849   
Gene and transcription
Genbank (Entrez)AB209223 AF151840 AF167438 AF395068 AI382141
RefSeq transcript (Entrez)NM_001252650 NM_016026
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838112 NW_004929393
Consensus coding sequences : CCDS (NCBI)RDH11
Cluster EST : UnigeneHs.719925 [ NCBI ]
CGAP (NCI)Hs.719925
Alternative Splicing : Fast-db (Paris)GSHG0009439
Alternative Splicing GalleryENSG00000072042
Gene ExpressionRDH11 [ NCBI-GEO ]     RDH11 [ SEEK ]   RDH11 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC12 (Uniprot)
NextProtQ8TC12  [Medical]
With graphics : InterProQ8TC12
Splice isoforms : SwissVarQ8TC12 (Swissvar)
Catalytic activity : Enzyme1.1.1.300 [ Enzyme-Expasy ]   1.1.1.3001.1.1.300 [ IntEnz-EBI ]   1.1.1.300 [ BRENDA ]   1.1.1.300 [ KEGG ]   
Domains : Interpro (EBI)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom   
Related proteins : CluSTrQ8TC12
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
DMDM Disease mutations51109
Blocks (Seattle)Q8TC12
Human Protein AtlasENSG00000072042
Peptide AtlasQ8TC12
HPRD09707
IPIIPI00339384   IPI00339385   IPI00910248   IPI00555948   IPI01025768   IPI01026108   IPI01026000   IPI01025203   IPI01025555   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC12
IntAct (EBI)Q8TC12
FunCoupENSG00000072042
BioGRIDRDH11
IntegromeDBRDH11
STRING (EMBL)RDH11
Ontologies - Pathways
QuickGOQ8TC12
Ontology : AmiGOretinoid metabolic process  photoreceptor inner segment  retinol dehydrogenase activity  intracellular  endoplasmic reticulum membrane  phototransduction, visible light  integral component of membrane  adaptation of rhodopsin mediated signaling  retinol metabolic process  retinal metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
Ontology : EGO-EBIretinoid metabolic process  photoreceptor inner segment  retinol dehydrogenase activity  intracellular  endoplasmic reticulum membrane  phototransduction, visible light  integral component of membrane  adaptation of rhodopsin mediated signaling  retinol metabolic process  retinal metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
Pathways : KEGGRetinol metabolism   
Protein Interaction DatabaseRDH11
DoCM (Curated mutations)RDH11
Wikipedia pathwaysRDH11
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRDH11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDH11
dbVarRDH11
ClinVarRDH11
1000_GenomesRDH11 
Exome Variant ServerRDH11
SNP (GeneSNP Utah)RDH11
SNP : HGBaseRDH11
Genetic variants : HAPMAPRDH11
Genomic Variants (DGV)RDH11 [DGVbeta]
Mutations
ICGC Data PortalENSG00000072042 
Somatic Mutations in Cancer : COSMICRDH11 
CONAN: Copy Number AnalysisRDH11 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:68143519-68162510
Mutations and Diseases : HGMDRDH11
OMIM607849   
MedgenRDH11
NextProtQ8TC12 [Medical]
GENETestsRDH11
Disease Genetic AssociationRDH11
Huge Navigator RDH11 [HugePedia]  RDH11 [HugeCancerGEM]
snp3D : Map Gene to Disease51109
DGIdb (Drug Gene Interaction db)RDH11
General knowledge
Homologs : HomoloGeneRDH11
Homology/Alignments : Family Browser (UCSC)RDH11
Phylogenetic Trees/Animal Genes : TreeFamRDH11
Chemical/Protein Interactions : CTD51109
Chemical/Pharm GKB GenePA134981588
Clinical trialRDH11
Cancer Resource (Charite)ENSG00000072042
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineRDH11
GoPubMedRDH11
iHOPRDH11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 18:17:25 CET 2015

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jlhuret@AtlasGeneticsOncology.org.