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RDH13 (retinol dehydrogenase 13)

Identity

Alias_namesmember 3
Alias_symbol (synonym)SDR7C3
Other alias
HGNC (Hugo) RDH13
LocusID (NCBI) 112724
Atlas_Id 54579
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55044324 and ends at 55063217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RDH13 (19q13.42) / FBXO3 (11p13)RDH13 (19q13.42) / NLRP9 (19q13.42)RDH13 (19q13.42) / PPP6R1 (19q13.42)
RDH13 (19q13.42) / RUSC1 (1q22)ZNF606 (19q13.43) / RDH13 (19q13.42)RDH13 19q13.42 / NLRP9 19q13.42
RDH13 19q13.42 / PPP6R1 19q13.42RDH13 19q13.42 / RUSC1 1q22ZNF606 19q13.43 / RDH13 19q13.42

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RDH13   19978
Cards
Entrez_Gene (NCBI)RDH13  112724  retinol dehydrogenase 13
AliasesSDR7C3
GeneCards (Weizmann)RDH13
Ensembl hg19 (Hinxton)ENSG00000160439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160439 [Gene_View]  chr19:55044324-55063217 [Contig_View]  RDH13 [Vega]
ICGC DataPortalENSG00000160439
TCGA cBioPortalRDH13
AceView (NCBI)RDH13
Genatlas (Paris)RDH13
WikiGenes112724
SOURCE (Princeton)RDH13
Genetics Home Reference (NIH)RDH13
Genomic and cartography
GoldenPath hg38 (UCSC)RDH13  -     chr19:55044324-55063217 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RDH13  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblRDH13 - 19q13.42 [CytoView hg19]  RDH13 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIRDH13 [Mapview hg19]  RDH13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075392 AK096798 AK122764 AK291579 AK310288
RefSeq transcript (Entrez)NM_001145971 NM_138412
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_052825 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061
Consensus coding sequences : CCDS (NCBI)RDH13
Cluster EST : UnigeneHs.731615 [ NCBI ]
CGAP (NCI)Hs.731615
Alternative Splicing GalleryENSG00000160439
Gene ExpressionRDH13 [ NCBI-GEO ]   RDH13 [ EBI - ARRAY_EXPRESS ]   RDH13 [ SEEK ]   RDH13 [ MEM ]
Gene Expression Viewer (FireBrowse)RDH13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112724
GTEX Portal (Tissue expression)RDH13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBN7
Splice isoforms : SwissVarQ8NBN7
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8NBN7
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)NAD(P)-bd_dom    Sc_DH/Rdtase_CS    SDR_fam   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)RDH13
DMDM Disease mutations112724
Blocks (Seattle)RDH13
SuperfamilyQ8NBN7
Human Protein AtlasENSG00000160439
Peptide AtlasQ8NBN7
HPRD17963
IPIIPI00301204   IPI00794338   IPI01013743   IPI00920994   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBN7
IntAct (EBI)Q8NBN7
FunCoupENSG00000160439
BioGRIDRDH13
STRING (EMBL)RDH13
ZODIACRDH13
Ontologies - Pathways
QuickGOQ8NBN7
Ontology : AmiGOmitochondrial inner membrane  response to high light intensity  retina layer formation  eye photoreceptor cell development  retinol metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
Ontology : EGO-EBImitochondrial inner membrane  response to high light intensity  retina layer formation  eye photoreceptor cell development  retinol metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
NDEx NetworkRDH13
Atlas of Cancer Signalling NetworkRDH13
Wikipedia pathwaysRDH13
Orthology - Evolution
OrthoDB112724
GeneTree (enSembl)ENSG00000160439
Phylogenetic Trees/Animal Genes : TreeFamRDH13
HOVERGENQ8NBN7
HOGENOMQ8NBN7
Homologs : HomoloGeneRDH13
Homology/Alignments : Family Browser (UCSC)RDH13
Gene fusions - Rearrangements
Fusion : MitelmanRDH13/FBXO3 [19q13.42/11p13]  
Fusion : MitelmanRDH13/NLRP9 [19q13.42/19q13.42]  [t(19;19)(q13;q13)]  
Fusion : MitelmanRDH13/PPP6R1 [19q13.42/19q13.42]  [t(19;19)(q13;q13)]  
Fusion : MitelmanRDH13/RUSC1 [19q13.42/1q22]  [t(1;19)(q22;q13)]  
Fusion : MitelmanZNF606/RDH13 [19q13.43/19q13.42]  [t(19;19)(q13;q13)]  
Fusion: TCGARDH13 19q13.42 NLRP9 19q13.42 BRCA
Fusion: TCGARDH13 19q13.42 PPP6R1 19q13.42 LUAD
Fusion: TCGARDH13 19q13.42 RUSC1 1q22 BRCA
Fusion: TCGAZNF606 19q13.43 RDH13 19q13.42 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRDH13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDH13
dbVarRDH13
ClinVarRDH13
1000_GenomesRDH13 
Exome Variant ServerRDH13
ExAC (Exome Aggregation Consortium)RDH13 (select the gene name)
Genetic variants : HAPMAP112724
Genomic Variants (DGV)RDH13 [DGVbeta]
DECIPHERRDH13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRDH13 
Mutations
ICGC Data PortalRDH13 
TCGA Data PortalRDH13 
Broad Tumor PortalRDH13
OASIS PortalRDH13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRDH13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRDH13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RDH13
DgiDB (Drug Gene Interaction Database)RDH13
DoCM (Curated mutations)RDH13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RDH13 (select a term)
intoGenRDH13
Cancer3DRDH13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRDH13
Genetic Testing Registry RDH13
NextProtQ8NBN7 [Medical]
TSGene112724
GENETestsRDH13
Huge Navigator RDH13 [HugePedia]
snp3D : Map Gene to Disease112724
BioCentury BCIQRDH13
ClinGenRDH13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112724
Chemical/Pharm GKB GenePA134897935
Clinical trialRDH13
Miscellaneous
canSAR (ICR)RDH13 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRDH13
EVEXRDH13
GoPubMedRDH13
iHOPRDH13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:38 CEST 2017

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