Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RDH14 (retinol dehydrogenase 14 (all-trans/9-cis/11-cis))

Identity

Alias_namesretinol dehydrogenase 14 (all-trans and 9-cis)
Alias_symbol (synonym)PAN2
SDR7C4
Other alias
HGNC (Hugo) RDH14
LocusID (NCBI) 57665
Atlas_Id 72564
Location 2p24.2  [Link to chromosome band 2p24]
Location_base_pair Starts at 18554723 and ends at 18560693 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYN1 (Xp11.23) / RDH14 (2p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RDH14   19979
Cards
Entrez_Gene (NCBI)RDH14  57665  retinol dehydrogenase 14 (all-trans/9-cis/11-cis)
AliasesPAN2; SDR7C4
GeneCards (Weizmann)RDH14
Ensembl hg19 (Hinxton)ENSG00000240857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240857 [Gene_View]  ENSG00000240857 [Sequence]  chr2:18554723-18560693 [Contig_View]  RDH14 [Vega]
ICGC DataPortalENSG00000240857
TCGA cBioPortalRDH14
AceView (NCBI)RDH14
Genatlas (Paris)RDH14
WikiGenes57665
SOURCE (Princeton)RDH14
Genetics Home Reference (NIH)RDH14
Genomic and cartography
GoldenPath hg38 (UCSC)RDH14  -     chr2:18554723-18560693 -  2p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RDH14  -     2p24.2   [Description]    (hg19-Feb_2009)
EnsemblRDH14 - 2p24.2 [CytoView hg19]  RDH14 - 2p24.2 [CytoView hg38]
Mapping of homologs : NCBIRDH14 [Mapview hg19]  RDH14 [Mapview hg38]
OMIM616796   
Gene and transcription
Genbank (Entrez)AF237952 AK023625 AK314994 AM393225 AY358511
RefSeq transcript (Entrez)NM_020905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RDH14
Cluster EST : UnigeneHs.120319 [ NCBI ]
CGAP (NCI)Hs.120319
Alternative Splicing GalleryENSG00000240857
Gene ExpressionRDH14 [ NCBI-GEO ]   RDH14 [ EBI - ARRAY_EXPRESS ]   RDH14 [ SEEK ]   RDH14 [ MEM ]
Gene Expression Viewer (FireBrowse)RDH14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57665
GTEX Portal (Tissue expression)RDH14
Human Protein AtlasENSG00000240857-RDH14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBH5
Splice isoforms : SwissVarQ9HBH5
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
PhosPhoSitePlusQ9HBH5
Domains : Interpro (EBI)NAD(P)-bd_dom    SDR_fam   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)RDH14
DMDM Disease mutations57665
Blocks (Seattle)RDH14
SuperfamilyQ9HBH5
Human Protein Atlas [tissue]ENSG00000240857-RDH14 [tissue]
Peptide AtlasQ9HBH5
HPRD10190
IPIIPI00177940   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBH5
IntAct (EBI)Q9HBH5
FunCoupENSG00000240857
BioGRIDRDH14
STRING (EMBL)RDH14
ZODIACRDH14
Ontologies - Pathways
QuickGOQ9HBH5
Ontology : AmiGOosteoblast differentiation  nucleus  mitochondrion  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  membrane  oxidoreductase activity  retinol metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
Ontology : EGO-EBIosteoblast differentiation  nucleus  mitochondrion  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  membrane  oxidoreductase activity  retinol metabolic process  NADP-retinol dehydrogenase activity  oxidation-reduction process  
Pathways : KEGG   
NDEx NetworkRDH14
Atlas of Cancer Signalling NetworkRDH14
Wikipedia pathwaysRDH14
Orthology - Evolution
OrthoDB57665
GeneTree (enSembl)ENSG00000240857
Phylogenetic Trees/Animal Genes : TreeFamRDH14
HOVERGENQ9HBH5
HOGENOMQ9HBH5
Homologs : HomoloGeneRDH14
Homology/Alignments : Family Browser (UCSC)RDH14
Gene fusions - Rearrangements
Fusion : QuiverRDH14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRDH14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDH14
dbVarRDH14
ClinVarRDH14
1000_GenomesRDH14 
Exome Variant ServerRDH14
ExAC (Exome Aggregation Consortium)ENSG00000240857
GNOMAD BrowserENSG00000240857
Varsome BrowserRDH14
Genetic variants : HAPMAP57665
Genomic Variants (DGV)RDH14 [DGVbeta]
DECIPHERRDH14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRDH14 
Mutations
ICGC Data PortalRDH14 
TCGA Data PortalRDH14 
Broad Tumor PortalRDH14
OASIS PortalRDH14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRDH14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRDH14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RDH14
DgiDB (Drug Gene Interaction Database)RDH14
DoCM (Curated mutations)RDH14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RDH14 (select a term)
intoGenRDH14
Cancer3DRDH14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616796   
Orphanet
DisGeNETRDH14
MedgenRDH14
Genetic Testing Registry RDH14
NextProtQ9HBH5 [Medical]
TSGene57665
GENETestsRDH14
Target ValidationRDH14
Huge Navigator RDH14 [HugePedia]
snp3D : Map Gene to Disease57665
BioCentury BCIQRDH14
ClinGenRDH14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57665
Chemical/Pharm GKB GenePA134872714
Clinical trialRDH14
Miscellaneous
canSAR (ICR)RDH14 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRDH14
EVEXRDH14
GoPubMedRDH14
iHOPRDH14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:26:15 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.