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RDH16 (retinol dehydrogenase 16 (all-trans))

Identity

Alias_namesretinol dehydrogenase 16 (all-trans and 13-cis)
Alias_symbol (synonym)RODH-4
SDR9C8
Other alias
HGNC (Hugo) RDH16
LocusID (NCBI) 8608
Atlas_Id 43979
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56951431 and ends at 56959374 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RDH16   29674
Cards
Entrez_Gene (NCBI)RDH16  8608  retinol dehydrogenase 16 (all-trans)
AliasesRODH-4; SDR9C8
GeneCards (Weizmann)RDH16
Ensembl hg19 (Hinxton)ENSG00000139547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139547 [Gene_View]  chr12:56951431-56959374 [Contig_View]  RDH16 [Vega]
ICGC DataPortalENSG00000139547
TCGA cBioPortalRDH16
AceView (NCBI)RDH16
Genatlas (Paris)RDH16
WikiGenes8608
SOURCE (Princeton)RDH16
Genetics Home Reference (NIH)RDH16
Genomic and cartography
GoldenPath hg38 (UCSC)RDH16  -     chr12:56951431-56959374 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RDH16  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblRDH16 - 12q13.3 [CytoView hg19]  RDH16 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIRDH16 [Mapview hg19]  RDH16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209332 AF057034 AF086735 AK311025 AW449664
RefSeq transcript (Entrez)NM_001320108 NM_003708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RDH16
Cluster EST : UnigeneHs.134958 [ NCBI ]
CGAP (NCI)Hs.134958
Alternative Splicing GalleryENSG00000139547
Gene ExpressionRDH16 [ NCBI-GEO ]   RDH16 [ EBI - ARRAY_EXPRESS ]   RDH16 [ SEEK ]   RDH16 [ MEM ]
Gene Expression Viewer (FireBrowse)RDH16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8608
GTEX Portal (Tissue expression)RDH16
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75452
Splice isoforms : SwissVarO75452
Catalytic activity : Enzyme1.1.-.- [ Enzyme-Expasy ]   1.1.-.-1.1.-.- [ IntEnz-EBI ]   1.1.-.- [ BRENDA ]   1.1.-.- [ KEGG ]   
PhosPhoSitePlusO75452
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)NAD(P)-bd_dom    Sc_DH/Rdtase_CS    SDR_fam   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)RDH16
DMDM Disease mutations8608
Blocks (Seattle)RDH16
SuperfamilyO75452
Human Protein AtlasENSG00000139547
Peptide AtlasO75452
HPRD10208
IPIIPI00289551   IPI00759602   IPI00555683   
Protein Interaction databases
DIP (DOE-UCLA)O75452
IntAct (EBI)O75452
FunCoupENSG00000139547
BioGRIDRDH16
STRING (EMBL)RDH16
ZODIACRDH16
Ontologies - Pathways
QuickGOO75452
Ontology : AmiGOretinol dehydrogenase activity  endoplasmic reticulum membrane  lipid metabolic process  electron carrier activity  integral component of membrane  organelle membrane  intracellular membrane-bounded organelle  oxidation-reduction process  
Ontology : EGO-EBIretinol dehydrogenase activity  endoplasmic reticulum membrane  lipid metabolic process  electron carrier activity  integral component of membrane  organelle membrane  intracellular membrane-bounded organelle  oxidation-reduction process  
Pathways : KEGGRetinol metabolism   
NDEx NetworkRDH16
Atlas of Cancer Signalling NetworkRDH16
Wikipedia pathwaysRDH16
Orthology - Evolution
OrthoDB8608
GeneTree (enSembl)ENSG00000139547
Phylogenetic Trees/Animal Genes : TreeFamRDH16
HOVERGENO75452
HOGENOMO75452
Homologs : HomoloGeneRDH16
Homology/Alignments : Family Browser (UCSC)RDH16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRDH16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDH16
dbVarRDH16
ClinVarRDH16
1000_GenomesRDH16 
Exome Variant ServerRDH16
ExAC (Exome Aggregation Consortium)RDH16 (select the gene name)
Genetic variants : HAPMAP8608
Genomic Variants (DGV)RDH16 [DGVbeta]
DECIPHERRDH16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRDH16 
Mutations
ICGC Data PortalRDH16 
TCGA Data PortalRDH16 
Broad Tumor PortalRDH16
OASIS PortalRDH16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRDH16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRDH16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RDH16
DgiDB (Drug Gene Interaction Database)RDH16
DoCM (Curated mutations)RDH16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RDH16 (select a term)
intoGenRDH16
Cancer3DRDH16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRDH16
Genetic Testing Registry RDH16
NextProtO75452 [Medical]
TSGene8608
GENETestsRDH16
Target ValidationRDH16
Huge Navigator RDH16 [HugePedia]
snp3D : Map Gene to Disease8608
BioCentury BCIQRDH16
ClinGenRDH16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8608
Chemical/Pharm GKB GenePA142671089
Clinical trialRDH16
Miscellaneous
canSAR (ICR)RDH16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRDH16
EVEXRDH16
GoPubMedRDH16
iHOPRDH16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:36 CEST 2017

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