Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RDH5 (retinol dehydrogenase 5)

Identity

Alias_namesRDH1
retinol dehydrogenase 5 (11-cis/9-cis)
Alias_symbol (synonym)HSD17B9
SDR9C5
Other alias9cRDH
HGNC (Hugo) RDH5
LocusID (NCBI) 5959
Atlas_Id 72565
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55720367 and ends at 55724742 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CPT1A (11q13.3) / RDH5 (12q13.2)RDH5 (12q13.2) / PRKCD (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RDH5   9940
Cards
Entrez_Gene (NCBI)RDH5  5959  retinol dehydrogenase 5
Aliases9cRDH; HSD17B9; RDH1; SDR9C5
GeneCards (Weizmann)RDH5
Ensembl hg19 (Hinxton)ENSG00000135437 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135437 [Gene_View]  chr12:55720367-55724742 [Contig_View]  RDH5 [Vega]
ICGC DataPortalENSG00000135437
TCGA cBioPortalRDH5
AceView (NCBI)RDH5
Genatlas (Paris)RDH5
WikiGenes5959
SOURCE (Princeton)RDH5
Genetics Home Reference (NIH)RDH5
Genomic and cartography
GoldenPath hg38 (UCSC)RDH5  -     chr12:55720367-55724742 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RDH5  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblRDH5 - 12q13.2 [CytoView hg19]  RDH5 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIRDH5 [Mapview hg19]  RDH5 [Mapview hg38]
OMIM136880   601617   
Gene and transcription
Genbank (Entrez)AK293313 AK307157 BC028298 BI765016 BP381700
RefSeq transcript (Entrez)NM_001199771 NM_002905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RDH5
Cluster EST : UnigeneHs.600940 [ NCBI ]
CGAP (NCI)Hs.600940
Alternative Splicing GalleryENSG00000135437
Gene ExpressionRDH5 [ NCBI-GEO ]   RDH5 [ EBI - ARRAY_EXPRESS ]   RDH5 [ SEEK ]   RDH5 [ MEM ]
Gene Expression Viewer (FireBrowse)RDH5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5959
GTEX Portal (Tissue expression)RDH5
Human Protein AtlasENSG00000135437-RDH5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92781   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92781  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92781
Splice isoforms : SwissVarQ92781
Catalytic activity : Enzyme1.1.1.315 [ Enzyme-Expasy ]   1.1.1.3151.1.1.315 [ IntEnz-EBI ]   1.1.1.315 [ BRENDA ]   1.1.1.315 [ KEGG ]   
PhosPhoSitePlusQ92781
Domains : Interpro (EBI)NAD(P)-bd_dom    RDH5    SDR_fam   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)RDH5
DMDM Disease mutations5959
Blocks (Seattle)RDH5
SuperfamilyQ92781
Human Protein Atlas [tissue]ENSG00000135437-RDH5 [tissue]
Peptide AtlasQ92781
HPRD03370
IPIIPI00023319   IPI01020779   IPI01020945   IPI01022648   
Protein Interaction databases
DIP (DOE-UCLA)Q92781
IntAct (EBI)Q92781
FunCoupENSG00000135437
BioGRIDRDH5
STRING (EMBL)RDH5
ZODIACRDH5
Ontologies - Pathways
QuickGOQ92781
Ontology : AmiGOretinoid metabolic process  retinol dehydrogenase activity  endoplasmic reticulum lumen  endoplasmic reticulum membrane  visual perception  retinol metabolic process  cell body  response to stimulus  oxidation-reduction process  
Ontology : EGO-EBIretinoid metabolic process  retinol dehydrogenase activity  endoplasmic reticulum lumen  endoplasmic reticulum membrane  visual perception  retinol metabolic process  cell body  response to stimulus  oxidation-reduction process  
Pathways : KEGGRetinol metabolism   
NDEx NetworkRDH5
Atlas of Cancer Signalling NetworkRDH5
Wikipedia pathwaysRDH5
Orthology - Evolution
OrthoDB5959
GeneTree (enSembl)ENSG00000135437
Phylogenetic Trees/Animal Genes : TreeFamRDH5
HOVERGENQ92781
HOGENOMQ92781
Homologs : HomoloGeneRDH5
Homology/Alignments : Family Browser (UCSC)RDH5
Gene fusions - Rearrangements
Fusion: Tumor Portal RDH5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRDH5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDH5
dbVarRDH5
ClinVarRDH5
1000_GenomesRDH5 
Exome Variant ServerRDH5
ExAC (Exome Aggregation Consortium)ENSG00000135437
GNOMAD BrowserENSG00000135437
Genetic variants : HAPMAP5959
Genomic Variants (DGV)RDH5 [DGVbeta]
DECIPHERRDH5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRDH5 
Mutations
ICGC Data PortalRDH5 
TCGA Data PortalRDH5 
Broad Tumor PortalRDH5
OASIS PortalRDH5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRDH5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRDH5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RDH5
DgiDB (Drug Gene Interaction Database)RDH5
DoCM (Curated mutations)RDH5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RDH5 (select a term)
intoGenRDH5
Cancer3DRDH5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM136880    601617   
Orphanet19056    10695   
MedgenRDH5
Genetic Testing Registry RDH5
NextProtQ92781 [Medical]
TSGene5959
GENETestsRDH5
Target ValidationRDH5
Huge Navigator RDH5 [HugePedia]
snp3D : Map Gene to Disease5959
BioCentury BCIQRDH5
ClinGenRDH5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5959
Chemical/Pharm GKB GenePA34308
Clinical trialRDH5
Miscellaneous
canSAR (ICR)RDH5 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRDH5
EVEXRDH5
GoPubMedRDH5
iHOPRDH5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:24:39 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.