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RDM1 (RAD52 motif containing 1)

Identity

Alias_namesRAD52B
RAD52 homolog B (S. cerevisiae)
RAD52 motif 1
Alias_symbol (synonym)MGC33977
Other alias
HGNC (Hugo) RDM1
LocusID (NCBI) 201299
Atlas_Id 42029
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35922478 and ends at 35930776 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RDM1   19950
Cards
Entrez_Gene (NCBI)RDM1  201299  RAD52 motif containing 1
AliasesRAD52B
GeneCards (Weizmann)RDM1
Ensembl hg19 (Hinxton)ENSG00000278023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278023 [Gene_View]  chr17:35922478-35930776 [Contig_View]  RDM1 [Vega]
ICGC DataPortalENSG00000278023
TCGA cBioPortalRDM1
AceView (NCBI)RDM1
Genatlas (Paris)RDM1
WikiGenes201299
SOURCE (Princeton)RDM1
Genetics Home Reference (NIH)RDM1
Genomic and cartography
GoldenPath hg38 (UCSC)RDM1  -     chr17:35922478-35930776 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RDM1  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblRDM1 - 17q12 [CytoView hg19]  RDM1 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIRDM1 [Mapview hg19]  RDM1 [Mapview hg38]
OMIM612896   
Gene and transcription
Genbank (Entrez)AA761980 AB080728 AK302782 AW138754 BC032114
RefSeq transcript (Entrez)NM_001034836 NM_001163120 NM_001163121 NM_001163122 NM_001163124 NM_001163125 NM_001163130 NM_001330194 NM_145654
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)RDM1
Cluster EST : UnigeneHs.194411 [ NCBI ]
CGAP (NCI)Hs.194411
Alternative Splicing GalleryENSG00000278023
Gene ExpressionRDM1 [ NCBI-GEO ]   RDM1 [ EBI - ARRAY_EXPRESS ]   RDM1 [ SEEK ]   RDM1 [ MEM ]
Gene Expression Viewer (FireBrowse)RDM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201299
GTEX Portal (Tissue expression)RDM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG50
Splice isoforms : SwissVarQ8NG50
PhosPhoSitePlusQ8NG50
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RDM1_RRM    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Conserved Domain (NCBI)RDM1
DMDM Disease mutations201299
Blocks (Seattle)RDM1
SuperfamilyQ8NG50
Human Protein AtlasENSG00000278023
Peptide AtlasQ8NG50
HPRD15205
IPIIPI00168915   IPI00876942   IPI00877094   IPI00789247   IPI01017997   IPI00788746   IPI00877163   IPI00793000   IPI00877137   IPI00876903   IPI00654678   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG50
IntAct (EBI)Q8NG50
FunCoupENSG00000278023
BioGRIDRDM1
STRING (EMBL)RDM1
ZODIACRDM1
Ontologies - Pathways
QuickGOQ8NG50
Ontology : AmiGODNA binding  RNA binding  protein binding  nucleolus  cytosol  Cajal body  PML body  
Ontology : EGO-EBIDNA binding  RNA binding  protein binding  nucleolus  cytosol  Cajal body  PML body  
NDEx NetworkRDM1
Atlas of Cancer Signalling NetworkRDM1
Wikipedia pathwaysRDM1
Orthology - Evolution
OrthoDB201299
GeneTree (enSembl)ENSG00000278023
Phylogenetic Trees/Animal Genes : TreeFamRDM1
HOVERGENQ8NG50
HOGENOMQ8NG50
Homologs : HomoloGeneRDM1
Homology/Alignments : Family Browser (UCSC)RDM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRDM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RDM1
dbVarRDM1
ClinVarRDM1
1000_GenomesRDM1 
Exome Variant ServerRDM1
ExAC (Exome Aggregation Consortium)RDM1 (select the gene name)
Genetic variants : HAPMAP201299
Genomic Variants (DGV)RDM1 [DGVbeta]
DECIPHERRDM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRDM1 
Mutations
ICGC Data PortalRDM1 
TCGA Data PortalRDM1 
Broad Tumor PortalRDM1
OASIS PortalRDM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRDM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RDM1
DgiDB (Drug Gene Interaction Database)RDM1
DoCM (Curated mutations)RDM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RDM1 (select a term)
intoGenRDM1
Cancer3DRDM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612896   
Orphanet
MedgenRDM1
Genetic Testing Registry RDM1
NextProtQ8NG50 [Medical]
TSGene201299
GENETestsRDM1
Target ValidationRDM1
Huge Navigator RDM1 [HugePedia]
snp3D : Map Gene to Disease201299
BioCentury BCIQRDM1
ClinGenRDM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201299
Chemical/Pharm GKB GenePA134932526
Clinical trialRDM1
Miscellaneous
canSAR (ICR)RDM1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRDM1
EVEXRDM1
GoPubMedRDM1
iHOPRDM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:27 CEST 2017

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