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REEP2 (receptor accessory protein 2)

Identity

Alias_namesC5orf19
chromosome 5 open reading frame 19
Alias_symbol (synonym)SGC32445
SPG72
Yip2d
Other alias
HGNC (Hugo) REEP2
LocusID (NCBI) 51308
Atlas_Id 72569
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 138439001 and ends at 138446969 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REEP2   17975
Cards
Entrez_Gene (NCBI)REEP2  51308  receptor accessory protein 2
AliasesC5orf19; SGC32445; SPG72; Yip2d
GeneCards (Weizmann)REEP2
Ensembl hg19 (Hinxton)ENSG00000132563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132563 [Gene_View]  chr5:138439001-138446969 [Contig_View]  REEP2 [Vega]
ICGC DataPortalENSG00000132563
TCGA cBioPortalREEP2
AceView (NCBI)REEP2
Genatlas (Paris)REEP2
WikiGenes51308
SOURCE (Princeton)REEP2
Genetics Home Reference (NIH)REEP2
Genomic and cartography
GoldenPath hg38 (UCSC)REEP2  -     chr5:138439001-138446969 +  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP2  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblREEP2 - 5q31.2 [CytoView hg19]  REEP2 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIREEP2 [Mapview hg19]  REEP2 [Mapview hg38]
OMIM609347   615625   
Gene and transcription
Genbank (Entrez)AF070551 AF251041 AK056193 AK223611 AK290547
RefSeq transcript (Entrez)NM_001271803 NM_016606
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REEP2
Cluster EST : UnigeneHs.416090 [ NCBI ]
CGAP (NCI)Hs.416090
Alternative Splicing GalleryENSG00000132563
Gene ExpressionREEP2 [ NCBI-GEO ]   REEP2 [ EBI - ARRAY_EXPRESS ]   REEP2 [ SEEK ]   REEP2 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51308
GTEX Portal (Tissue expression)REEP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRK0
Splice isoforms : SwissVarQ9BRK0
PhosPhoSitePlusQ9BRK0
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP2
DMDM Disease mutations51308
Blocks (Seattle)REEP2
SuperfamilyQ9BRK0
Human Protein AtlasENSG00000132563
Peptide AtlasQ9BRK0
HPRD16655
IPIIPI00657841   IPI00604430   IPI00983354   IPI00968176   IPI00967612   IPI00967268   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRK0
IntAct (EBI)Q9BRK0
FunCoupENSG00000132563
BioGRIDREEP2
STRING (EMBL)REEP2
ZODIACREEP2
Ontologies - Pathways
QuickGOQ9BRK0
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  cytoplasmic microtubule  integral component of plasma membrane  taste receptor binding  regulation of intracellular transport  protein transport into membrane raft  sensory perception of bitter taste  sensory perception of sweet taste  extracellular exosome  endoplasmic reticulum tubular network organization  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  cytoplasmic microtubule  integral component of plasma membrane  taste receptor binding  regulation of intracellular transport  protein transport into membrane raft  sensory perception of bitter taste  sensory perception of sweet taste  extracellular exosome  endoplasmic reticulum tubular network organization  
NDEx NetworkREEP2
Atlas of Cancer Signalling NetworkREEP2
Wikipedia pathwaysREEP2
Orthology - Evolution
OrthoDB51308
GeneTree (enSembl)ENSG00000132563
Phylogenetic Trees/Animal Genes : TreeFamREEP2
HOVERGENQ9BRK0
HOGENOMQ9BRK0
Homologs : HomoloGeneREEP2
Homology/Alignments : Family Browser (UCSC)REEP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP2
dbVarREEP2
ClinVarREEP2
1000_GenomesREEP2 
Exome Variant ServerREEP2
ExAC (Exome Aggregation Consortium)REEP2 (select the gene name)
Genetic variants : HAPMAP51308
Genomic Variants (DGV)REEP2 [DGVbeta]
DECIPHERREEP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP2 
Mutations
ICGC Data PortalREEP2 
TCGA Data PortalREEP2 
Broad Tumor PortalREEP2
OASIS PortalREEP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREEP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP2
DgiDB (Drug Gene Interaction Database)REEP2
DoCM (Curated mutations)REEP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP2 (select a term)
intoGenREEP2
Cancer3DREEP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609347    615625   
Orphanet22840   
MedgenREEP2
Genetic Testing Registry REEP2
NextProtQ9BRK0 [Medical]
TSGene51308
GENETestsREEP2
Target ValidationREEP2
Huge Navigator REEP2 [HugePedia]
snp3D : Map Gene to Disease51308
BioCentury BCIQREEP2
ClinGenREEP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51308
Chemical/Pharm GKB GenePA134920985
Clinical trialREEP2
Miscellaneous
canSAR (ICR)REEP2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP2
EVEXREEP2
GoPubMedREEP2
iHOPREEP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:02 CEST 2017

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