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REEP3 (receptor accessory protein 3)

Identity

Alias (NCBI)C10orf74
Yip2b
HGNC (Hugo) REEP3
HGNC Alias symbYip2b
HGNC Previous nameC10orf74
HGNC Previous namechromosome 10 open reading frame 74
LocusID (NCBI) 221035
Atlas_Id 72570
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 63521401 and ends at 63625128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPIF (10q22.3) / REEP3 (10q21.3)REEP3 (10q21.3) / MSH2 (2p21)ZNF608 (5q23.2) / REEP3 (10q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)REEP3   23711
Cards
Entrez_Gene (NCBI)REEP3    receptor accessory protein 3
AliasesC10orf74; Yip2b
GeneCards (Weizmann)REEP3
Ensembl hg19 (Hinxton)ENSG00000165476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165476 [Gene_View]  ENSG00000165476 [Sequence]  chr10:63521401-63625128 [Contig_View]  REEP3 [Vega]
ICGC DataPortalENSG00000165476
TCGA cBioPortalREEP3
AceView (NCBI)REEP3
Genatlas (Paris)REEP3
SOURCE (Princeton)REEP3
Genetics Home Reference (NIH)REEP3
Genomic and cartography
GoldenPath hg38 (UCSC)REEP3  -     chr10:63521401-63625128 +  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP3  -     10q21.3   [Description]    (hg19-Feb_2009)
GoldenPathREEP3 - 10q21.3 [CytoView hg19]  REEP3 - 10q21.3 [CytoView hg38]
ImmunoBaseENSG00000165476
Genome Data Viewer NCBIREEP3 [Mapview hg19]  
OMIM609348   
Gene and transcription
Genbank (Entrez)AK289976 AY562241 BC010040 BC018658 BC038724
RefSeq transcript (Entrez)NM_001001330
Consensus coding sequences : CCDS (NCBI)REEP3
Gene ExpressionREEP3 [ NCBI-GEO ]   REEP3 [ EBI - ARRAY_EXPRESS ]   REEP3 [ SEEK ]   REEP3 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP3 [ Firebrowse - Broad ]
GenevisibleExpression of REEP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221035
GTEX Portal (Tissue expression)REEP3
Human Protein AtlasENSG00000165476-REEP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUK4
PhosPhoSitePlusQ6NUK4
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP3
SuperfamilyQ6NUK4
AlphaFold pdb e-kbQ6NUK4   
Human Protein Atlas [tissue]ENSG00000165476-REEP3 [tissue]
HPRD16582
Protein Interaction databases
DIP (DOE-UCLA)Q6NUK4
IntAct (EBI)Q6NUK4
BioGRIDREEP3
STRING (EMBL)REEP3
ZODIACREEP3
Ontologies - Pathways
QuickGOQ6NUK4
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  cytoplasmic microtubule  nuclear envelope organization  mitotic nuclear membrane reassembly  microtubule binding  membrane  integral component of membrane  cell division  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network organization  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  cytoplasmic microtubule  nuclear envelope organization  mitotic nuclear membrane reassembly  microtubule binding  membrane  integral component of membrane  cell division  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network organization  
NDEx NetworkREEP3
Atlas of Cancer Signalling NetworkREEP3
Wikipedia pathwaysREEP3
Orthology - Evolution
OrthoDB221035
GeneTree (enSembl)ENSG00000165476
Phylogenetic Trees/Animal Genes : TreeFamREEP3
Homologs : HomoloGeneREEP3
Homology/Alignments : Family Browser (UCSC)REEP3
Gene fusions - Rearrangements
Fusion : QuiverREEP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP3
dbVarREEP3
ClinVarREEP3
MonarchREEP3
1000_GenomesREEP3 
Exome Variant ServerREEP3
GNOMAD BrowserENSG00000165476
Varsome BrowserREEP3
ACMGREEP3 variants
VarityQ6NUK4
Genomic Variants (DGV)REEP3 [DGVbeta]
DECIPHERREEP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP3 
Mutations
ICGC Data PortalREEP3 
TCGA Data PortalREEP3 
Broad Tumor PortalREEP3
OASIS PortalREEP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DREEP3
Mutations and Diseases : HGMDREEP3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaREEP3
DgiDB (Drug Gene Interaction Database)REEP3
DoCM (Curated mutations)REEP3
CIViC (Clinical Interpretations of Variants in Cancer)REEP3
Cancer3DREEP3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609348   
Orphanet
DisGeNETREEP3
MedgenREEP3
Genetic Testing Registry REEP3
NextProtQ6NUK4 [Medical]
GENETestsREEP3
Target ValidationREEP3
Huge Navigator REEP3 [HugePedia]
ClinGenREEP3
Clinical trials, drugs, therapy
MyCancerGenomeREEP3
Protein Interactions : CTDREEP3
Pharm GKB GenePA134863406
PharosQ6NUK4
Clinical trialREEP3
Miscellaneous
canSAR (ICR)REEP3
HarmonizomeREEP3
DataMed IndexREEP3
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXREEP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:12 CEST 2021

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