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REEP3 (receptor accessory protein 3)

Identity

Alias_namesC10orf74
chromosome 10 open reading frame 74
Alias_symbol (synonym)Yip2b
Other alias
HGNC (Hugo) REEP3
LocusID (NCBI) 221035
Atlas_Id 72570
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 63521363 and ends at 63625123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPIF (10q22.3) / REEP3 (10q21.3)REEP3 (10q21.3) / MSH2 (2p21)ZNF608 (5q23.2) / REEP3 (10q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REEP3   23711
Cards
Entrez_Gene (NCBI)REEP3  221035  receptor accessory protein 3
AliasesC10orf74; Yip2b
GeneCards (Weizmann)REEP3
Ensembl hg19 (Hinxton)ENSG00000165476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165476 [Gene_View]  chr10:63521363-63625123 [Contig_View]  REEP3 [Vega]
ICGC DataPortalENSG00000165476
TCGA cBioPortalREEP3
AceView (NCBI)REEP3
Genatlas (Paris)REEP3
WikiGenes221035
SOURCE (Princeton)REEP3
Genetics Home Reference (NIH)REEP3
Genomic and cartography
GoldenPath hg38 (UCSC)REEP3  -     chr10:63521363-63625123 +  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP3  -     10q21.3   [Description]    (hg19-Feb_2009)
EnsemblREEP3 - 10q21.3 [CytoView hg19]  REEP3 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIREEP3 [Mapview hg19]  REEP3 [Mapview hg38]
OMIM609348   
Gene and transcription
Genbank (Entrez)AK289976 AY562241 BC010040 BC018658 BC038724
RefSeq transcript (Entrez)NM_001001330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REEP3
Cluster EST : UnigeneHs.499833 [ NCBI ]
CGAP (NCI)Hs.499833
Alternative Splicing GalleryENSG00000165476
Gene ExpressionREEP3 [ NCBI-GEO ]   REEP3 [ EBI - ARRAY_EXPRESS ]   REEP3 [ SEEK ]   REEP3 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221035
GTEX Portal (Tissue expression)REEP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUK4
Splice isoforms : SwissVarQ6NUK4
PhosPhoSitePlusQ6NUK4
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP3
DMDM Disease mutations221035
Blocks (Seattle)REEP3
SuperfamilyQ6NUK4
Human Protein AtlasENSG00000165476
Peptide AtlasQ6NUK4
HPRD16582
IPIIPI00164434   IPI00658022   IPI00935391   IPI00937441   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUK4
IntAct (EBI)Q6NUK4
FunCoupENSG00000165476
BioGRIDREEP3
STRING (EMBL)REEP3
ZODIACREEP3
Ontologies - Pathways
QuickGOQ6NUK4
Ontology : AmiGOendoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  integral component of membrane  cell division  
Ontology : EGO-EBIendoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  integral component of membrane  cell division  
NDEx NetworkREEP3
Atlas of Cancer Signalling NetworkREEP3
Wikipedia pathwaysREEP3
Orthology - Evolution
OrthoDB221035
GeneTree (enSembl)ENSG00000165476
Phylogenetic Trees/Animal Genes : TreeFamREEP3
HOVERGENQ6NUK4
HOGENOMQ6NUK4
Homologs : HomoloGeneREEP3
Homology/Alignments : Family Browser (UCSC)REEP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP3
dbVarREEP3
ClinVarREEP3
1000_GenomesREEP3 
Exome Variant ServerREEP3
ExAC (Exome Aggregation Consortium)REEP3 (select the gene name)
Genetic variants : HAPMAP221035
Genomic Variants (DGV)REEP3 [DGVbeta]
DECIPHERREEP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP3 
Mutations
ICGC Data PortalREEP3 
TCGA Data PortalREEP3 
Broad Tumor PortalREEP3
OASIS PortalREEP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREEP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP3
DgiDB (Drug Gene Interaction Database)REEP3
DoCM (Curated mutations)REEP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP3 (select a term)
intoGenREEP3
Cancer3DREEP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609348   
Orphanet
MedgenREEP3
Genetic Testing Registry REEP3
NextProtQ6NUK4 [Medical]
TSGene221035
GENETestsREEP3
Target ValidationREEP3
Huge Navigator REEP3 [HugePedia]
snp3D : Map Gene to Disease221035
BioCentury BCIQREEP3
ClinGenREEP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221035
Chemical/Pharm GKB GenePA134863406
Clinical trialREEP3
Miscellaneous
canSAR (ICR)REEP3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP3
EVEXREEP3
GoPubMedREEP3
iHOPREEP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:02 CEST 2017

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