Atlas of Genetics and Cytogenetics in Oncology and Haematology

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REEP4 (receptor accessory protein 4)

Identity

Alias (NCBI)C8orf20
PP432
Yip2c
HGNC (Hugo) REEP4
HGNC Alias symbFLJ22246
FLJ22277
PP432
Yip2c
HGNC Previous nameC8orf20
HGNC Previous namechromosome 8 open reading frame 20
LocusID (NCBI) 80346
Atlas_Id 72571
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22138014 and ends at 22141951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LHFP (13q13.3) / REEP4 (8p21.3)REEP4 (8p21.3) / CDH17 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)REEP4   26176
Cards
Entrez_Gene (NCBI)REEP4    receptor accessory protein 4
AliasesC8orf20; PP432; Yip2c
GeneCards (Weizmann)REEP4
Ensembl hg19 (Hinxton)ENSG00000168476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168476 [Gene_View]  ENSG00000168476 [Sequence]  chr8:22138014-22141951 [Contig_View]  REEP4 [Vega]
ICGC DataPortalENSG00000168476
TCGA cBioPortalREEP4
AceView (NCBI)REEP4
Genatlas (Paris)REEP4
SOURCE (Princeton)REEP4
Genetics Home Reference (NIH)REEP4
Genomic and cartography
GoldenPath hg38 (UCSC)REEP4  -     chr8:22138014-22141951 -  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP4  -     8p21.3   [Description]    (hg19-Feb_2009)
GoldenPathREEP4 - 8p21.3 [CytoView hg19]  REEP4 - 8p21.3 [CytoView hg38]
ImmunoBaseENSG00000168476
genome Data Viewer NCBIREEP4 [Mapview hg19]  
OMIM609349   
Gene and transcription
Genbank (Entrez)AF218014 AK025899 AK025930 AK172846 AK302352
RefSeq transcript (Entrez)NM_001316964 NM_001316965 NM_025232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REEP4
Alternative Splicing GalleryENSG00000168476
Gene ExpressionREEP4 [ NCBI-GEO ]   REEP4 [ EBI - ARRAY_EXPRESS ]   REEP4 [ SEEK ]   REEP4 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP4 [ Firebrowse - Broad ]
GenevisibleExpression of REEP4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80346
GTEX Portal (Tissue expression)REEP4
Human Protein AtlasENSG00000168476-REEP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6H4
Splice isoforms : SwissVarQ9H6H4
PhosPhoSitePlusQ9H6H4
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP4
Blocks (Seattle)REEP4
SuperfamilyQ9H6H4
Human Protein Atlas [tissue]ENSG00000168476-REEP4 [tissue]
Peptide AtlasQ9H6H4
HPRD09864
IPIIPI00100674   IPI00384331   IPI00790619   IPI01011892   IPI00974364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6H4
IntAct (EBI)Q9H6H4
BioGRIDREEP4
STRING (EMBL)REEP4
ZODIACREEP4
Ontologies - Pathways
QuickGOQ9H6H4
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  microtubule binding  integral component of membrane  cell division  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  microtubule binding  integral component of membrane  cell division  
NDEx NetworkREEP4
Atlas of Cancer Signalling NetworkREEP4
Wikipedia pathwaysREEP4
Orthology - Evolution
OrthoDB80346
GeneTree (enSembl)ENSG00000168476
Phylogenetic Trees/Animal Genes : TreeFamREEP4
HOGENOMQ9H6H4
Homologs : HomoloGeneREEP4
Homology/Alignments : Family Browser (UCSC)REEP4
Gene fusions - Rearrangements
Fusion : QuiverREEP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP4 [hg38]
dbVarREEP4
ClinVarREEP4
MonarchREEP4
1000_GenomesREEP4 
Exome Variant ServerREEP4
GNOMAD BrowserENSG00000168476
Varsome BrowserREEP4
Genomic Variants (DGV)REEP4 [DGVbeta]
DECIPHERREEP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP4 
Mutations
ICGC Data PortalREEP4 
TCGA Data PortalREEP4 
Broad Tumor PortalREEP4
OASIS PortalREEP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DREEP4
Mutations and Diseases : HGMDREEP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP4
DgiDB (Drug Gene Interaction Database)REEP4
DoCM (Curated mutations)REEP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP4 (select a term)
intoGenREEP4
Cancer3DREEP4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609349   
Orphanet
DisGeNETREEP4
MedgenREEP4
Genetic Testing Registry REEP4
NextProtQ9H6H4 [Medical]
GENETestsREEP4
Target ValidationREEP4
Huge Navigator REEP4 [HugePedia]
ClinGenREEP4
Clinical trials, drugs, therapy
MyCancerGenomeREEP4
Protein Interactions : CTD
Pharm GKB GenePA134890554
Clinical trialREEP4
Miscellaneous
canSAR (ICR)REEP4 (select the gene name)
HarmonizomeREEP4
DataMed IndexREEP4
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP4
EVEXREEP4
GoPubMedREEP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:24:29 CET 2020
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