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REEP4 (receptor accessory protein 4)

Identity

Alias_namesC8orf20
chromosome 8 open reading frame 20
Alias_symbol (synonym)FLJ22246
FLJ22277
PP432
Yip2c
Other alias
HGNC (Hugo) REEP4
LocusID (NCBI) 80346
Atlas_Id 72571
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22138014 and ends at 22141951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LHFP (13q13.3) / REEP4 (8p21.3)REEP4 (8p21.3) / CDH17 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REEP4   26176
Cards
Entrez_Gene (NCBI)REEP4  80346  receptor accessory protein 4
AliasesC8orf20; PP432; Yip2c
GeneCards (Weizmann)REEP4
Ensembl hg19 (Hinxton)ENSG00000168476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168476 [Gene_View]  chr8:22138014-22141951 [Contig_View]  REEP4 [Vega]
ICGC DataPortalENSG00000168476
TCGA cBioPortalREEP4
AceView (NCBI)REEP4
Genatlas (Paris)REEP4
WikiGenes80346
SOURCE (Princeton)REEP4
Genetics Home Reference (NIH)REEP4
Genomic and cartography
GoldenPath hg38 (UCSC)REEP4  -     chr8:22138014-22141951 -  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP4  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblREEP4 - 8p21.3 [CytoView hg19]  REEP4 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIREEP4 [Mapview hg19]  REEP4 [Mapview hg38]
OMIM609349   
Gene and transcription
Genbank (Entrez)AF218014 AK025899 AK025930 AK172846 AK302352
RefSeq transcript (Entrez)NM_001316964 NM_001316965 NM_025232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REEP4
Cluster EST : UnigeneHs.289063 [ NCBI ]
CGAP (NCI)Hs.289063
Alternative Splicing GalleryENSG00000168476
Gene ExpressionREEP4 [ NCBI-GEO ]   REEP4 [ EBI - ARRAY_EXPRESS ]   REEP4 [ SEEK ]   REEP4 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80346
GTEX Portal (Tissue expression)REEP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6H4
Splice isoforms : SwissVarQ9H6H4
PhosPhoSitePlusQ9H6H4
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP4
DMDM Disease mutations80346
Blocks (Seattle)REEP4
SuperfamilyQ9H6H4
Human Protein AtlasENSG00000168476
Peptide AtlasQ9H6H4
HPRD09864
IPIIPI00100674   IPI00384331   IPI00790619   IPI01011892   IPI00974364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6H4
IntAct (EBI)Q9H6H4
FunCoupENSG00000168476
BioGRIDREEP4
STRING (EMBL)REEP4
ZODIACREEP4
Ontologies - Pathways
QuickGOQ9H6H4
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  microtubule binding  integral component of membrane  cell division  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  microtubule  nuclear envelope organization  mitotic nuclear envelope reassembly  microtubule binding  integral component of membrane  cell division  
NDEx NetworkREEP4
Atlas of Cancer Signalling NetworkREEP4
Wikipedia pathwaysREEP4
Orthology - Evolution
OrthoDB80346
GeneTree (enSembl)ENSG00000168476
Phylogenetic Trees/Animal Genes : TreeFamREEP4
HOVERGENQ9H6H4
HOGENOMQ9H6H4
Homologs : HomoloGeneREEP4
Homology/Alignments : Family Browser (UCSC)REEP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP4
dbVarREEP4
ClinVarREEP4
1000_GenomesREEP4 
Exome Variant ServerREEP4
ExAC (Exome Aggregation Consortium)REEP4 (select the gene name)
Genetic variants : HAPMAP80346
Genomic Variants (DGV)REEP4 [DGVbeta]
DECIPHERREEP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP4 
Mutations
ICGC Data PortalREEP4 
TCGA Data PortalREEP4 
Broad Tumor PortalREEP4
OASIS PortalREEP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREEP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP4
DgiDB (Drug Gene Interaction Database)REEP4
DoCM (Curated mutations)REEP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP4 (select a term)
intoGenREEP4
Cancer3DREEP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609349   
Orphanet
MedgenREEP4
Genetic Testing Registry REEP4
NextProtQ9H6H4 [Medical]
TSGene80346
GENETestsREEP4
Target ValidationREEP4
Huge Navigator REEP4 [HugePedia]
snp3D : Map Gene to Disease80346
BioCentury BCIQREEP4
ClinGenREEP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80346
Chemical/Pharm GKB GenePA134890554
Clinical trialREEP4
Miscellaneous
canSAR (ICR)REEP4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP4
EVEXREEP4
GoPubMedREEP4
iHOPREEP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:36:02 CEST 2017

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