Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

REEP5 (receptor accessory protein 5)

Identity

Alias_namesC5orf18
chromosome 5 open reading frame 18
Alias_symbol (synonym)DP1
TB2
D5S346
Yip2e
Other aliasYOP1
HGNC (Hugo) REEP5
LocusID (NCBI) 7905
Atlas_Id 72572
Location 5q22.2  [Link to chromosome band 5q22]
Location_base_pair Starts at 112876384 and ends at 112922334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCP2 (5q22.2) / REEP5 (5q22.2)REEP5 (5q22.2) / MCC (5q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REEP5   30077
Cards
Entrez_Gene (NCBI)REEP5  7905  receptor accessory protein 5
AliasesC5orf18; D5S346; DP1; TB2; 
YOP1; Yip2e
GeneCards (Weizmann)REEP5
Ensembl hg19 (Hinxton)ENSG00000129625 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129625 [Gene_View]  chr5:112876384-112922334 [Contig_View]  REEP5 [Vega]
ICGC DataPortalENSG00000129625
TCGA cBioPortalREEP5
AceView (NCBI)REEP5
Genatlas (Paris)REEP5
WikiGenes7905
SOURCE (Princeton)REEP5
Genetics Home Reference (NIH)REEP5
Genomic and cartography
GoldenPath hg38 (UCSC)REEP5  -     chr5:112876384-112922334 -  5q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP5  -     5q22.2   [Description]    (hg19-Feb_2009)
EnsemblREEP5 - 5q22.2 [CytoView hg19]  REEP5 - 5q22.2 [CytoView hg38]
Mapping of homologs : NCBIREEP5 [Mapview hg19]  REEP5 [Mapview hg38]
OMIM125265   
Gene and transcription
Genbank (Entrez)AK294496 AK295436 AK298268 AK299902 AK300048
RefSeq transcript (Entrez)NM_005669
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REEP5
Cluster EST : UnigeneHs.429608 [ NCBI ]
CGAP (NCI)Hs.429608
Alternative Splicing GalleryENSG00000129625
Gene ExpressionREEP5 [ NCBI-GEO ]   REEP5 [ EBI - ARRAY_EXPRESS ]   REEP5 [ SEEK ]   REEP5 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7905
GTEX Portal (Tissue expression)REEP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00765   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00765  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00765
Splice isoforms : SwissVarQ00765
PhosPhoSitePlusQ00765
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP5
DMDM Disease mutations7905
Blocks (Seattle)REEP5
SuperfamilyQ00765
Human Protein AtlasENSG00000129625
Peptide AtlasQ00765
HPRD15918
IPIIPI00024670   IPI00922887   IPI00965182   IPI00852934   IPI00964630   IPI00922823   
Protein Interaction databases
DIP (DOE-UCLA)Q00765
IntAct (EBI)Q00765
FunCoupENSG00000129625
BioGRIDREEP5
STRING (EMBL)REEP5
ZODIACREEP5
Ontologies - Pathways
QuickGOQ00765
Ontology : AmiGOmolecular_function  protein binding  biological_process  integral component of membrane  extracellular exosome  endoplasmic reticulum tubular network  
Ontology : EGO-EBImolecular_function  protein binding  biological_process  integral component of membrane  extracellular exosome  endoplasmic reticulum tubular network  
NDEx NetworkREEP5
Atlas of Cancer Signalling NetworkREEP5
Wikipedia pathwaysREEP5
Orthology - Evolution
OrthoDB7905
GeneTree (enSembl)ENSG00000129625
Phylogenetic Trees/Animal Genes : TreeFamREEP5
HOVERGENQ00765
HOGENOMQ00765
Homologs : HomoloGeneREEP5
Homology/Alignments : Family Browser (UCSC)REEP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP5
dbVarREEP5
ClinVarREEP5
1000_GenomesREEP5 
Exome Variant ServerREEP5
ExAC (Exome Aggregation Consortium)REEP5 (select the gene name)
Genetic variants : HAPMAP7905
Genomic Variants (DGV)REEP5 [DGVbeta]
DECIPHERREEP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP5 
Mutations
ICGC Data PortalREEP5 
TCGA Data PortalREEP5 
Broad Tumor PortalREEP5
OASIS PortalREEP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREEP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP5
DgiDB (Drug Gene Interaction Database)REEP5
DoCM (Curated mutations)REEP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP5 (select a term)
intoGenREEP5
Cancer3DREEP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125265   
Orphanet
MedgenREEP5
Genetic Testing Registry REEP5
NextProtQ00765 [Medical]
TSGene7905
GENETestsREEP5
Target ValidationREEP5
Huge Navigator REEP5 [HugePedia]
snp3D : Map Gene to Disease7905
BioCentury BCIQREEP5
ClinGenREEP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7905
Chemical/Pharm GKB GenePA134882361
Clinical trialREEP5
Miscellaneous
canSAR (ICR)REEP5 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP5
EVEXREEP5
GoPubMedREEP5
iHOPREEP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.