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REEP6 (receptor accessory protein 6)

Identity

Alias (NCBI)C19orf32
DP1L1
REEP6.1
REEP6.2
RP77
TB2L1
Yip2f
HGNC (Hugo) REEP6
HGNC Alias symbDP1L1
FLJ25383
Yip2f
HGNC Alias namepolyposis locus protein 1-like 1
 deleted in polyposis 1-like 1
HGNC Previous nameC19orf32
HGNC Previous namechromosome 19 open reading frame 32
LocusID (NCBI) 92840
Atlas_Id 51450
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1491181 and ends at 1497927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)REEP6   30078
Cards
Entrez_Gene (NCBI)REEP6    receptor accessory protein 6
AliasesC19orf32; DP1L1; REEP6.1; REEP6.2; 
RP77; TB2L1; Yip2f
GeneCards (Weizmann)REEP6
Ensembl hg19 (Hinxton)ENSG00000115255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115255 [Gene_View]  ENSG00000115255 [Sequence]  chr19:1491181-1497927 [Contig_View]  REEP6 [Vega]
ICGC DataPortalENSG00000115255
TCGA cBioPortalREEP6
AceView (NCBI)REEP6
Genatlas (Paris)REEP6
SOURCE (Princeton)REEP6
Genetics Home Reference (NIH)REEP6
Genomic and cartography
GoldenPath hg38 (UCSC)REEP6  -     chr19:1491181-1497927 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REEP6  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathREEP6 - 19p13.3 [CytoView hg19]  REEP6 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000115255
Genome Data Viewer NCBIREEP6 [Mapview hg19]  
OMIM609346   617304   
Gene and transcription
Genbank (Entrez)AK058112 AK293919 AK315744 AX775999 AY562244
RefSeq transcript (Entrez)NM_001329556 NM_138393
Consensus coding sequences : CCDS (NCBI)REEP6
Gene ExpressionREEP6 [ NCBI-GEO ]   REEP6 [ EBI - ARRAY_EXPRESS ]   REEP6 [ SEEK ]   REEP6 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP6 [ Firebrowse - Broad ]
GenevisibleExpression of REEP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92840
GTEX Portal (Tissue expression)REEP6
Human Protein AtlasENSG00000115255-REEP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HR9
PhosPhoSitePlusQ96HR9
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP6
SuperfamilyQ96HR9
AlphaFold pdb e-kbQ96HR9   
Human Protein Atlas [tissue]ENSG00000115255-REEP6 [tissue]
HPRD16629
Protein Interaction databases
DIP (DOE-UCLA)Q96HR9
IntAct (EBI)Q96HR9
BioGRIDREEP6
STRING (EMBL)REEP6
ZODIACREEP6
Ontologies - Pathways
QuickGOQ96HR9
Ontology : AmiGOphotoreceptor inner segment  protein binding  nucleus  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum organization  integral component of membrane  clathrin-coated vesicle membrane  regulation of intracellular transport  detection of light stimulus involved in visual perception  
Ontology : EGO-EBIphotoreceptor inner segment  protein binding  nucleus  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum organization  integral component of membrane  clathrin-coated vesicle membrane  regulation of intracellular transport  detection of light stimulus involved in visual perception  
NDEx NetworkREEP6
Atlas of Cancer Signalling NetworkREEP6
Wikipedia pathwaysREEP6
Orthology - Evolution
OrthoDB92840
GeneTree (enSembl)ENSG00000115255
Phylogenetic Trees/Animal Genes : TreeFamREEP6
Homologs : HomoloGeneREEP6
Homology/Alignments : Family Browser (UCSC)REEP6
Gene fusions - Rearrangements
Fusion : QuiverREEP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP6
dbVarREEP6
ClinVarREEP6
MonarchREEP6
1000_GenomesREEP6 
Exome Variant ServerREEP6
GNOMAD BrowserENSG00000115255
Varsome BrowserREEP6
ACMGREEP6 variants
VarityQ96HR9
Genomic Variants (DGV)REEP6 [DGVbeta]
DECIPHERREEP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREEP6 
Mutations
ICGC Data PortalREEP6 
TCGA Data PortalREEP6 
Broad Tumor PortalREEP6
OASIS PortalREEP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DREEP6
Mutations and Diseases : HGMDREEP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaREEP6
DgiDB (Drug Gene Interaction Database)REEP6
DoCM (Curated mutations)REEP6
CIViC (Clinical Interpretations of Variants in Cancer)REEP6
Cancer3DREEP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609346    617304   
Orphanet
DisGeNETREEP6
MedgenREEP6
Genetic Testing Registry REEP6
NextProtQ96HR9 [Medical]
GENETestsREEP6
Target ValidationREEP6
Huge Navigator REEP6 [HugePedia]
ClinGenREEP6
Clinical trials, drugs, therapy
MyCancerGenomeREEP6
Protein Interactions : CTDREEP6
Pharm GKB GenePA134892881
PharosQ96HR9
Clinical trialREEP6
Miscellaneous
canSAR (ICR)REEP6
HarmonizomeREEP6
DataMed IndexREEP6
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXREEP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:28:38 CEST 2021

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