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REEP6 (receptor accessory protein 6)

Identity

Alias_namesC19orf32
chromosome 19 open reading frame 32
Alias_symbol (synonym)DP1L1
FLJ25383
Yip2f
Other aliasTB2L1
HGNC (Hugo) REEP6
LocusID (NCBI) 92840
Atlas_Id 51450
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1491165 and ends at 1497924 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REEP6   30078
Cards
Entrez_Gene (NCBI)REEP6  92840  receptor accessory protein 6
AliasesC19orf32; DP1L1; TB2L1; Yip2f
GeneCards (Weizmann)REEP6
Ensembl hg19 (Hinxton)ENSG00000115255 [Gene_View]  chr19:1491165-1497924 [Contig_View]  REEP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115255 [Gene_View]  chr19:1491165-1497924 [Contig_View]  REEP6 [Vega]
ICGC DataPortalENSG00000115255
TCGA cBioPortalREEP6
AceView (NCBI)REEP6
Genatlas (Paris)REEP6
WikiGenes92840
SOURCE (Princeton)REEP6
Genetics Home Reference (NIH)REEP6
Genomic and cartography
GoldenPath hg19 (UCSC)REEP6  -     chr19:1491165-1497924 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)REEP6  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblREEP6 - 19p13.3 [CytoView hg19]  REEP6 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIREEP6 [Mapview hg19]  REEP6 [Mapview hg38]
OMIM609346   
Gene and transcription
Genbank (Entrez)AK058112 AK293919 AK315744 AX775999 AY562244
RefSeq transcript (Entrez)NM_138393
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)REEP6
Cluster EST : UnigeneHs.76277 [ NCBI ]
CGAP (NCI)Hs.76277
Alternative Splicing GalleryENSG00000115255
Gene ExpressionREEP6 [ NCBI-GEO ]   REEP6 [ EBI - ARRAY_EXPRESS ]   REEP6 [ SEEK ]   REEP6 [ MEM ]
Gene Expression Viewer (FireBrowse)REEP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92840
GTEX Portal (Tissue expression)REEP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HR9
Splice isoforms : SwissVarQ96HR9
PhosPhoSitePlusQ96HR9
Domains : Interpro (EBI)TB2_DP1_HVA22   
Domain families : Pfam (Sanger)TB2_DP1_HVA22 (PF03134)   
Domain families : Pfam (NCBI)pfam03134   
Conserved Domain (NCBI)REEP6
DMDM Disease mutations92840
Blocks (Seattle)REEP6
SuperfamilyQ96HR9
Human Protein AtlasENSG00000115255
Peptide AtlasQ96HR9
HPRD16629
IPIIPI00647161   IPI00910126   IPI00646963   IPI00791854   
Protein Interaction databases
DIP (DOE-UCLA)Q96HR9
IntAct (EBI)Q96HR9
FunCoupENSG00000115255
BioGRIDREEP6
STRING (EMBL)REEP6
ZODIACREEP6
Ontologies - Pathways
QuickGOQ96HR9
Ontology : AmiGOmolecular_function  protein binding  nucleus  endoplasmic reticulum membrane  biological_process  integral component of membrane  regulation of intracellular transport  rod spherule  apical part of cell  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  endoplasmic reticulum membrane  biological_process  integral component of membrane  regulation of intracellular transport  rod spherule  apical part of cell  
NDEx NetworkREEP6
Atlas of Cancer Signalling NetworkREEP6
Wikipedia pathwaysREEP6
Orthology - Evolution
OrthoDB92840
GeneTree (enSembl)ENSG00000115255
Phylogenetic Trees/Animal Genes : TreeFamREEP6
HOVERGENQ96HR9
HOGENOMQ96HR9
Homologs : HomoloGeneREEP6
Homology/Alignments : Family Browser (UCSC)REEP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREEP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REEP6
dbVarREEP6
ClinVarREEP6
1000_GenomesREEP6 
Exome Variant ServerREEP6
ExAC (Exome Aggregation Consortium)REEP6 (select the gene name)
Genetic variants : HAPMAP92840
Genomic Variants (DGV)REEP6 [DGVbeta]
DECIPHER (Syndromes)19:1491165-1497924  ENSG00000115255
CONAN: Copy Number AnalysisREEP6 
Mutations
ICGC Data PortalREEP6 
TCGA Data PortalREEP6 
Broad Tumor PortalREEP6
OASIS PortalREEP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREEP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREEP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REEP6
DgiDB (Drug Gene Interaction Database)REEP6
DoCM (Curated mutations)REEP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REEP6 (select a term)
intoGenREEP6
Cancer3DREEP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609346   
Orphanet
MedgenREEP6
Genetic Testing Registry REEP6
NextProtQ96HR9 [Medical]
TSGene92840
GENETestsREEP6
Huge Navigator REEP6 [HugePedia]
snp3D : Map Gene to Disease92840
BioCentury BCIQREEP6
ClinGenREEP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92840
Chemical/Pharm GKB GenePA134892881
Clinical trialREEP6
Miscellaneous
canSAR (ICR)REEP6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREEP6
EVEXREEP6
GoPubMedREEP6
iHOPREEP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:45 CET 2017

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