Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

REG1B (regenerating family member 1 beta)

Identity

Alias_namesregenerating islet-derived 1 beta (pancreatic stone protein
Alias_symbol (synonym)REGL
PSPS2
REGH
REGI-BETA
Other alias
HGNC (Hugo) REG1B
LocusID (NCBI) 5968
Atlas_Id 51380
Location 2p12  [Link to chromosome band 2p12]
Location_base_pair Starts at 79085023 and ends at 79088024 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REG1B   9952
Cards
Entrez_Gene (NCBI)REG1B  5968  regenerating family member 1 beta
AliasesPSPS2; REGH; REGI-BETA; REGL
GeneCards (Weizmann)REG1B
Ensembl hg19 (Hinxton)ENSG00000172023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172023 [Gene_View]  chr2:79085023-79088024 [Contig_View]  REG1B [Vega]
ICGC DataPortalENSG00000172023
TCGA cBioPortalREG1B
AceView (NCBI)REG1B
Genatlas (Paris)REG1B
WikiGenes5968
SOURCE (Princeton)REG1B
Genetics Home Reference (NIH)REG1B
Genomic and cartography
GoldenPath hg38 (UCSC)REG1B  -     chr2:79085023-79088024 -  2p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REG1B  -     2p12   [Description]    (hg19-Feb_2009)
EnsemblREG1B - 2p12 [CytoView hg19]  REG1B - 2p12 [CytoView hg38]
Mapping of homologs : NCBIREG1B [Mapview hg19]  REG1B [Mapview hg38]
OMIM167771   
Gene and transcription
Genbank (Entrez)AK308507 AK308515 AK311088 AK312057 BC027895
RefSeq transcript (Entrez)NM_006507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REG1B
Cluster EST : UnigeneHs.708865 [ NCBI ]
CGAP (NCI)Hs.708865
Alternative Splicing GalleryENSG00000172023
Gene ExpressionREG1B [ NCBI-GEO ]   REG1B [ EBI - ARRAY_EXPRESS ]   REG1B [ SEEK ]   REG1B [ MEM ]
Gene Expression Viewer (FireBrowse)REG1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5968
GTEX Portal (Tissue expression)REG1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48304
Splice isoforms : SwissVarP48304
PhosPhoSitePlusP48304
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)REG1B
DMDM Disease mutations5968
Blocks (Seattle)REG1B
SuperfamilyP48304
Human Protein AtlasENSG00000172023
Peptide AtlasP48304
HPRD01339
IPIIPI00009197   IPI00916240   
Protein Interaction databases
DIP (DOE-UCLA)P48304
IntAct (EBI)P48304
FunCoupENSG00000172023
BioGRIDREG1B
STRING (EMBL)REG1B
ZODIACREG1B
Ontologies - Pathways
QuickGOP48304
Ontology : AmiGOcell proliferation  carbohydrate binding  extracellular exosome  
Ontology : EGO-EBIcell proliferation  carbohydrate binding  extracellular exosome  
NDEx NetworkREG1B
Atlas of Cancer Signalling NetworkREG1B
Wikipedia pathwaysREG1B
Orthology - Evolution
OrthoDB5968
GeneTree (enSembl)ENSG00000172023
Phylogenetic Trees/Animal Genes : TreeFamREG1B
HOVERGENP48304
HOGENOMP48304
Homologs : HomoloGeneREG1B
Homology/Alignments : Family Browser (UCSC)REG1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREG1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REG1B
dbVarREG1B
ClinVarREG1B
1000_GenomesREG1B 
Exome Variant ServerREG1B
ExAC (Exome Aggregation Consortium)REG1B (select the gene name)
Genetic variants : HAPMAP5968
Genomic Variants (DGV)REG1B [DGVbeta]
DECIPHERREG1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREG1B 
Mutations
ICGC Data PortalREG1B 
TCGA Data PortalREG1B 
Broad Tumor PortalREG1B
OASIS PortalREG1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREG1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREG1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REG1B
DgiDB (Drug Gene Interaction Database)REG1B
DoCM (Curated mutations)REG1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REG1B (select a term)
intoGenREG1B
Cancer3DREG1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM167771   
Orphanet
MedgenREG1B
Genetic Testing Registry REG1B
NextProtP48304 [Medical]
TSGene5968
GENETestsREG1B
Target ValidationREG1B
Huge Navigator REG1B [HugePedia]
snp3D : Map Gene to Disease5968
BioCentury BCIQREG1B
ClinGenREG1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5968
Chemical/Pharm GKB GenePA34319
Clinical trialREG1B
Miscellaneous
canSAR (ICR)REG1B (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREG1B
EVEXREG1B
GoPubMedREG1B
iHOPREG1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:52:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.