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REG3G (regenerating family member 3 gamma)

Identity

Alias_namesregenerating islet-derived 3 gamma
Alias_symbol (synonym)UNQ429
LPPM429
PAP1B
Other aliasPAP IB
PAP-1B
PAPIB
REG III
REG-III
HGNC (Hugo) REG3G
LocusID (NCBI) 130120
Atlas_Id 56210
Location 2p12  [Link to chromosome band 2p12]
Location_base_pair Starts at 79252812 and ends at 79255630 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REG3G   29595
Cards
Entrez_Gene (NCBI)REG3G  130120  regenerating family member 3 gamma
AliasesLPPM429; PAP; PAP-1B; PAP1B; 
PAPIB; REG; REG-III; UNQ429
GeneCards (Weizmann)REG3G
Ensembl hg19 (Hinxton)ENSG00000143954 [Gene_View]  chr2:79252812-79255630 [Contig_View]  REG3G [Vega]
Ensembl hg38 (Hinxton)ENSG00000143954 [Gene_View]  chr2:79252812-79255630 [Contig_View]  REG3G [Vega]
ICGC DataPortalENSG00000143954
TCGA cBioPortalREG3G
AceView (NCBI)REG3G
Genatlas (Paris)REG3G
WikiGenes130120
SOURCE (Princeton)REG3G
Genetics Home Reference (NIH)REG3G
Genomic and cartography
GoldenPath hg19 (UCSC)REG3G  -     chr2:79252812-79255630 +  2p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)REG3G  -     2p12   [Description]    (hg38-Dec_2013)
EnsemblREG3G - 2p12 [CytoView hg19]  REG3G - 2p12 [CytoView hg38]
Mapping of homologs : NCBIREG3G [Mapview hg19]  REG3G [Mapview hg38]
OMIM609933   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001008387 NM_001270040 NM_198448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REG3G
Cluster EST : UnigeneHs.447084 [ NCBI ]
CGAP (NCI)Hs.447084
Alternative Splicing GalleryENSG00000143954
Gene ExpressionREG3G [ NCBI-GEO ]   REG3G [ EBI - ARRAY_EXPRESS ]   REG3G [ SEEK ]   REG3G [ MEM ]
Gene Expression Viewer (FireBrowse)REG3G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130120
GTEX Portal (Tissue expression)REG3G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW15
Splice isoforms : SwissVarQ6UW15
PhosPhoSitePlusQ6UW15
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)REG3G
DMDM Disease mutations130120
Blocks (Seattle)REG3G
SuperfamilyQ6UW15
Human Protein AtlasENSG00000143954
Peptide AtlasQ6UW15
HPRD10137
IPIIPI00394807   IPI00651690   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW15
IntAct (EBI)Q6UW15
FunCoupENSG00000143954
BioGRIDREG3G
STRING (EMBL)REG3G
ZODIACREG3G
Ontologies - Pathways
QuickGOQ6UW15
Ontology : AmiGOMyD88-dependent toll-like receptor signaling pathway  extracellular region  cytoplasm  acute-phase response  positive regulation of keratinocyte proliferation  carbohydrate binding  negative regulation of keratinocyte differentiation  defense response to Gram-positive bacterium  positive regulation of wound healing  
Ontology : EGO-EBIMyD88-dependent toll-like receptor signaling pathway  extracellular region  cytoplasm  acute-phase response  positive regulation of keratinocyte proliferation  carbohydrate binding  negative regulation of keratinocyte differentiation  defense response to Gram-positive bacterium  positive regulation of wound healing  
NDEx NetworkREG3G
Atlas of Cancer Signalling NetworkREG3G
Wikipedia pathwaysREG3G
Orthology - Evolution
OrthoDB130120
GeneTree (enSembl)ENSG00000143954
Phylogenetic Trees/Animal Genes : TreeFamREG3G
HOVERGENQ6UW15
HOGENOMQ6UW15
Homologs : HomoloGeneREG3G
Homology/Alignments : Family Browser (UCSC)REG3G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREG3G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REG3G
dbVarREG3G
ClinVarREG3G
1000_GenomesREG3G 
Exome Variant ServerREG3G
ExAC (Exome Aggregation Consortium)REG3G (select the gene name)
Genetic variants : HAPMAP130120
Genomic Variants (DGV)REG3G [DGVbeta]
DECIPHER (Syndromes)2:79252812-79255630  ENSG00000143954
CONAN: Copy Number AnalysisREG3G 
Mutations
ICGC Data PortalREG3G 
TCGA Data PortalREG3G 
Broad Tumor PortalREG3G
OASIS PortalREG3G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREG3G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREG3G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REG3G
DgiDB (Drug Gene Interaction Database)REG3G
DoCM (Curated mutations)REG3G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REG3G (select a term)
intoGenREG3G
Cancer3DREG3G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609933   
Orphanet
MedgenREG3G
Genetic Testing Registry REG3G
NextProtQ6UW15 [Medical]
TSGene130120
GENETestsREG3G
Huge Navigator REG3G [HugePedia]
snp3D : Map Gene to Disease130120
BioCentury BCIQREG3G
ClinGenREG3G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130120
Chemical/Pharm GKB GenePA142671087
Clinical trialREG3G
Miscellaneous
canSAR (ICR)REG3G (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREG3G
EVEXREG3G
GoPubMedREG3G
iHOPREG3G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:45 CET 2017

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