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RELL2 (RELT like 2)

Identity

Alias_namesC5orf16
chromosome 5 open reading frame 16
RELT-like 2
Alias_symbol (synonym)FLJ90583
Other alias
HGNC (Hugo) RELL2
LocusID (NCBI) 285613
Atlas_Id 72576
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141636950 and ends at 141641064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RELL2 (5q31.3) / CHD4 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RELL2   26902
Cards
Entrez_Gene (NCBI)RELL2  285613  RELT like 2
AliasesC5orf16
GeneCards (Weizmann)RELL2
Ensembl hg19 (Hinxton)ENSG00000164620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164620 [Gene_View]  chr5:141636950-141641064 [Contig_View]  RELL2 [Vega]
ICGC DataPortalENSG00000164620
TCGA cBioPortalRELL2
AceView (NCBI)RELL2
Genatlas (Paris)RELL2
WikiGenes285613
SOURCE (Princeton)RELL2
Genetics Home Reference (NIH)RELL2
Genomic and cartography
GoldenPath hg38 (UCSC)RELL2  -     chr5:141636950-141641064 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RELL2  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblRELL2 - 5q31.3 [CytoView hg19]  RELL2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIRELL2 [Mapview hg19]  RELL2 [Mapview hg38]
OMIM611213   
Gene and transcription
Genbank (Entrez)AK054889 AK075064 AY358163 BC009560 BC027919
RefSeq transcript (Entrez)NM_001130029 NM_173828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RELL2
Cluster EST : UnigeneHs.120094 [ NCBI ]
CGAP (NCI)Hs.120094
Alternative Splicing GalleryENSG00000164620
Gene ExpressionRELL2 [ NCBI-GEO ]   RELL2 [ EBI - ARRAY_EXPRESS ]   RELL2 [ SEEK ]   RELL2 [ MEM ]
Gene Expression Viewer (FireBrowse)RELL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285613
GTEX Portal (Tissue expression)RELL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC24
Splice isoforms : SwissVarQ8NC24
PhosPhoSitePlusQ8NC24
Domains : Interpro (EBI)TNF_rcpt_RELT   
Domain families : Pfam (Sanger)RELT (PF12606)   
Domain families : Pfam (NCBI)pfam12606   
Conserved Domain (NCBI)RELL2
DMDM Disease mutations285613
Blocks (Seattle)RELL2
SuperfamilyQ8NC24
Human Protein AtlasENSG00000164620
Peptide AtlasQ8NC24
HPRD12830
IPIIPI00184227   IPI00979005   IPI00978320   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC24
IntAct (EBI)Q8NC24
FunCoupENSG00000164620
BioGRIDRELL2
STRING (EMBL)RELL2
ZODIACRELL2
Ontologies - Pathways
QuickGOQ8NC24
Ontology : AmiGOprotein binding  collagen binding  basement membrane  plasma membrane  positive regulation of cell-substrate adhesion  integral component of membrane  
Ontology : EGO-EBIprotein binding  collagen binding  basement membrane  plasma membrane  positive regulation of cell-substrate adhesion  integral component of membrane  
NDEx NetworkRELL2
Atlas of Cancer Signalling NetworkRELL2
Wikipedia pathwaysRELL2
Orthology - Evolution
OrthoDB285613
GeneTree (enSembl)ENSG00000164620
Phylogenetic Trees/Animal Genes : TreeFamRELL2
HOVERGENQ8NC24
HOGENOMQ8NC24
Homologs : HomoloGeneRELL2
Homology/Alignments : Family Browser (UCSC)RELL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRELL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RELL2
dbVarRELL2
ClinVarRELL2
1000_GenomesRELL2 
Exome Variant ServerRELL2
ExAC (Exome Aggregation Consortium)RELL2 (select the gene name)
Genetic variants : HAPMAP285613
Genomic Variants (DGV)RELL2 [DGVbeta]
DECIPHERRELL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRELL2 
Mutations
ICGC Data PortalRELL2 
TCGA Data PortalRELL2 
Broad Tumor PortalRELL2
OASIS PortalRELL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRELL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRELL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RELL2
DgiDB (Drug Gene Interaction Database)RELL2
DoCM (Curated mutations)RELL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RELL2 (select a term)
intoGenRELL2
Cancer3DRELL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611213   
Orphanet
MedgenRELL2
Genetic Testing Registry RELL2
NextProtQ8NC24 [Medical]
TSGene285613
GENETestsRELL2
Target ValidationRELL2
Huge Navigator RELL2 [HugePedia]
snp3D : Map Gene to Disease285613
BioCentury BCIQRELL2
ClinGenRELL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285613
Chemical/Pharm GKB GenePA162401073
Clinical trialRELL2
Miscellaneous
canSAR (ICR)RELL2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRELL2
EVEXRELL2
GoPubMedRELL2
iHOPRELL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:29 CEST 2017

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