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RELT (RELT, TNF receptor)

Identity

Alias_namesTNFRSF19L
tumor necrosis factor receptor superfamily
Alias_symbol (synonym)FLJ14993
Other aliasTRLT
HGNC (Hugo) RELT
LocusID (NCBI) 84957
Atlas_Id 42619
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 73376668 and ends at 73397474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RELT (11q13.4) / NADSYN1 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RELT   13764
Cards
Entrez_Gene (NCBI)RELT  84957  RELT, TNF receptor
AliasesTNFRSF19L; TRLT
GeneCards (Weizmann)RELT
Ensembl hg19 (Hinxton)ENSG00000054967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054967 [Gene_View]  chr11:73376668-73397474 [Contig_View]  RELT [Vega]
ICGC DataPortalENSG00000054967
TCGA cBioPortalRELT
AceView (NCBI)RELT
Genatlas (Paris)RELT
WikiGenes84957
SOURCE (Princeton)RELT
Genetics Home Reference (NIH)RELT
Genomic and cartography
GoldenPath hg38 (UCSC)RELT  -     chr11:73376668-73397474 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RELT  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblRELT - 11q13.4 [CytoView hg19]  RELT - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIRELT [Mapview hg19]  RELT [Mapview hg38]
OMIM611211   
Gene and transcription
Genbank (Entrez)AF319553 AK027899 AK057036 AK074128 AK310103
RefSeq transcript (Entrez)NM_032871 NM_152222
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RELT
Cluster EST : UnigeneHs.533720 [ NCBI ]
CGAP (NCI)Hs.533720
Alternative Splicing GalleryENSG00000054967
Gene ExpressionRELT [ NCBI-GEO ]   RELT [ EBI - ARRAY_EXPRESS ]   RELT [ SEEK ]   RELT [ MEM ]
Gene Expression Viewer (FireBrowse)RELT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84957
GTEX Portal (Tissue expression)RELT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969Z4
Splice isoforms : SwissVarQ969Z4
PhosPhoSitePlusQ969Z4
Domains : Interpro (EBI)TNF_rcpt_RELT    TNFR_19-like    TNFRSF19L_N   
Domain families : Pfam (Sanger)RELT (PF12606)   
Domain families : Pfam (NCBI)pfam12606   
Conserved Domain (NCBI)RELT
DMDM Disease mutations84957
Blocks (Seattle)RELT
SuperfamilyQ969Z4
Human Protein AtlasENSG00000054967
Peptide AtlasQ969Z4
HPRD15544
IPIIPI00064377   IPI00903277   IPI01013284   IPI01014036   
Protein Interaction databases
DIP (DOE-UCLA)Q969Z4
IntAct (EBI)Q969Z4
FunCoupENSG00000054967
BioGRIDRELT
STRING (EMBL)RELT
ZODIACRELT
Ontologies - Pathways
QuickGOQ969Z4
Ontology : AmiGOtumor necrosis factor-activated receptor activity  cytoplasm  integral component of plasma membrane  inflammatory response  immune response  multicellular organism development  response to lipopolysaccharide  tumor necrosis factor-mediated signaling pathway  regulation of cell proliferation  regulation of apoptotic process  extracellular exosome  apoptotic signaling pathway  
Ontology : EGO-EBItumor necrosis factor-activated receptor activity  cytoplasm  integral component of plasma membrane  inflammatory response  immune response  multicellular organism development  response to lipopolysaccharide  tumor necrosis factor-mediated signaling pathway  regulation of cell proliferation  regulation of apoptotic process  extracellular exosome  apoptotic signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction   
NDEx NetworkRELT
Atlas of Cancer Signalling NetworkRELT
Wikipedia pathwaysRELT
Orthology - Evolution
OrthoDB84957
GeneTree (enSembl)ENSG00000054967
Phylogenetic Trees/Animal Genes : TreeFamRELT
HOVERGENQ969Z4
HOGENOMQ969Z4
Homologs : HomoloGeneRELT
Homology/Alignments : Family Browser (UCSC)RELT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRELT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RELT
dbVarRELT
ClinVarRELT
1000_GenomesRELT 
Exome Variant ServerRELT
ExAC (Exome Aggregation Consortium)RELT (select the gene name)
Genetic variants : HAPMAP84957
Genomic Variants (DGV)RELT [DGVbeta]
DECIPHERRELT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRELT 
Mutations
ICGC Data PortalRELT 
TCGA Data PortalRELT 
Broad Tumor PortalRELT
OASIS PortalRELT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRELT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRELT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RELT
DgiDB (Drug Gene Interaction Database)RELT
DoCM (Curated mutations)RELT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RELT (select a term)
intoGenRELT
Cancer3DRELT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611211   
Orphanet
MedgenRELT
Genetic Testing Registry RELT
NextProtQ969Z4 [Medical]
TSGene84957
GENETestsRELT
Target ValidationRELT
Huge Navigator RELT [HugePedia]
snp3D : Map Gene to Disease84957
BioCentury BCIQRELT
ClinGenRELT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84957
Chemical/Pharm GKB GenePA162401092
Clinical trialRELT
Miscellaneous
canSAR (ICR)RELT (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRELT
EVEXRELT
GoPubMedRELT
iHOPRELT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:58 CEST 2017

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