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REP15 (RAB15 effector protein)

Identity

Alias_symbol (synonym)RAB15EP
Other alias
HGNC (Hugo) REP15
LocusID (NCBI) 387849
Atlas_Id 72579
Location 12p11.22  [Link to chromosome band 12p11]
Location_base_pair Starts at 27696519 and ends at 27697589 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REP15   33748
Cards
Entrez_Gene (NCBI)REP15  387849  RAB15 effector protein
AliasesRAB15EP
GeneCards (Weizmann)REP15
Ensembl hg19 (Hinxton)ENSG00000174236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174236 [Gene_View]  chr12:27696519-27697589 [Contig_View]  REP15 [Vega]
ICGC DataPortalENSG00000174236
TCGA cBioPortalREP15
AceView (NCBI)REP15
Genatlas (Paris)REP15
WikiGenes387849
SOURCE (Princeton)REP15
Genetics Home Reference (NIH)REP15
Genomic and cartography
GoldenPath hg38 (UCSC)REP15  -     chr12:27696519-27697589 +  12p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REP15  -     12p11.22   [Description]    (hg19-Feb_2009)
EnsemblREP15 - 12p11.22 [CytoView hg19]  REP15 - 12p11.22 [CytoView hg38]
Mapping of homologs : NCBIREP15 [Mapview hg19]  REP15 [Mapview hg38]
OMIM610848   
Gene and transcription
Genbank (Entrez)AW294816 AY662682 BC140921
RefSeq transcript (Entrez)NM_001029874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REP15
Cluster EST : UnigeneHs.269836 [ NCBI ]
CGAP (NCI)Hs.269836
Alternative Splicing GalleryENSG00000174236
Gene ExpressionREP15 [ NCBI-GEO ]   REP15 [ EBI - ARRAY_EXPRESS ]   REP15 [ SEEK ]   REP15 [ MEM ]
Gene Expression Viewer (FireBrowse)REP15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387849
GTEX Portal (Tissue expression)REP15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6BDI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6BDI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6BDI9
Splice isoforms : SwissVarQ6BDI9
PhosPhoSitePlusQ6BDI9
Domains : Interpro (EBI)Rab15_effector   
Domain families : Pfam (Sanger)Rab15_effector (PF15208)   
Domain families : Pfam (NCBI)pfam15208   
Conserved Domain (NCBI)REP15
DMDM Disease mutations387849
Blocks (Seattle)REP15
SuperfamilyQ6BDI9
Human Protein AtlasENSG00000174236
Peptide AtlasQ6BDI9
IPIIPI00465270   
Protein Interaction databases
DIP (DOE-UCLA)Q6BDI9
IntAct (EBI)Q6BDI9
FunCoupENSG00000174236
BioGRIDREP15
STRING (EMBL)REP15
ZODIACREP15
Ontologies - Pathways
QuickGOQ6BDI9
Ontology : AmiGOreceptor recycling  protein binding  endosome membrane  early endosome membrane  transferrin transport  perinuclear region of cytoplasm  recycling endosome  
Ontology : EGO-EBIreceptor recycling  protein binding  endosome membrane  early endosome membrane  transferrin transport  perinuclear region of cytoplasm  recycling endosome  
NDEx NetworkREP15
Atlas of Cancer Signalling NetworkREP15
Wikipedia pathwaysREP15
Orthology - Evolution
OrthoDB387849
GeneTree (enSembl)ENSG00000174236
Phylogenetic Trees/Animal Genes : TreeFamREP15
HOVERGENQ6BDI9
HOGENOMQ6BDI9
Homologs : HomoloGeneREP15
Homology/Alignments : Family Browser (UCSC)REP15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREP15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REP15
dbVarREP15
ClinVarREP15
1000_GenomesREP15 
Exome Variant ServerREP15
ExAC (Exome Aggregation Consortium)REP15 (select the gene name)
Genetic variants : HAPMAP387849
Genomic Variants (DGV)REP15 [DGVbeta]
DECIPHERREP15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREP15 
Mutations
ICGC Data PortalREP15 
TCGA Data PortalREP15 
Broad Tumor PortalREP15
OASIS PortalREP15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREP15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREP15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REP15
DgiDB (Drug Gene Interaction Database)REP15
DoCM (Curated mutations)REP15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REP15 (select a term)
intoGenREP15
Cancer3DREP15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610848   
Orphanet
MedgenREP15
Genetic Testing Registry REP15
NextProtQ6BDI9 [Medical]
TSGene387849
GENETestsREP15
Target ValidationREP15
Huge Navigator REP15 [HugePedia]
snp3D : Map Gene to Disease387849
BioCentury BCIQREP15
ClinGenREP15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387849
Chemical/Pharm GKB GenePA165513308
Clinical trialREP15
Miscellaneous
canSAR (ICR)REP15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREP15
EVEXREP15
GoPubMedREP15
iHOPREP15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:03 CEST 2017

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