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REPIN1 (replication initiator 1)

Identity

Alias_namesZNF464
zinc finger protein 464 (RIP60)
Alias_symbol (synonym)RIP60
AP4
H_DJ0584D14.12
Zfp464
Other alias
HGNC (Hugo) REPIN1
LocusID (NCBI) 29803
Atlas_Id 53851
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150368790 and ends at 150374044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLPPR4 (1p21.2) / REPIN1 (7q36.1)REPIN1 (7q36.1) / REPIN1 (7q36.1)SRC (20q11.23) / REPIN1 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REPIN1   17922
Cards
Entrez_Gene (NCBI)REPIN1  29803  replication initiator 1
AliasesAP4; RIP60; ZNF464; Zfp464
GeneCards (Weizmann)REPIN1
Ensembl hg19 (Hinxton)ENSG00000214022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214022 [Gene_View]  chr7:150368790-150374044 [Contig_View]  REPIN1 [Vega]
ICGC DataPortalENSG00000214022
TCGA cBioPortalREPIN1
AceView (NCBI)REPIN1
Genatlas (Paris)REPIN1
WikiGenes29803
SOURCE (Princeton)REPIN1
Genetics Home Reference (NIH)REPIN1
Genomic and cartography
GoldenPath hg38 (UCSC)REPIN1  -     chr7:150368790-150374044 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REPIN1  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblREPIN1 - 7q36.1 [CytoView hg19]  REPIN1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIREPIN1 [Mapview hg19]  REPIN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF201303 AJ245553 AK025356 AK225227 AK226081
RefSeq transcript (Entrez)NM_001099695 NM_001099696 NM_013400 NM_014374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REPIN1
Cluster EST : UnigeneHs.655734 [ NCBI ]
CGAP (NCI)Hs.655734
Alternative Splicing GalleryENSG00000214022
Gene ExpressionREPIN1 [ NCBI-GEO ]   REPIN1 [ EBI - ARRAY_EXPRESS ]   REPIN1 [ SEEK ]   REPIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)REPIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29803
GTEX Portal (Tissue expression)REPIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWE0
Splice isoforms : SwissVarQ9BWE0
PhosPhoSitePlusQ9BWE0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)REPIN1
DMDM Disease mutations29803
Blocks (Seattle)REPIN1
SuperfamilyQ9BWE0
Human Protein AtlasENSG00000214022
Peptide AtlasQ9BWE0
HPRD17966
IPIIPI00549171   IPI00945141   IPI00945572   IPI00947456   IPI00945054   IPI00947277   IPI00947109   IPI00945306   IPI00977703   IPI00945481   IPI00973780   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWE0
IntAct (EBI)Q9BWE0
FunCoupENSG00000214022
BioGRIDREPIN1
STRING (EMBL)REPIN1
ZODIACREPIN1
Ontologies - Pathways
QuickGOQ9BWE0
Ontology : AmiGODNA binding  RNA binding  nucleus  nuclear origin of replication recognition complex  lipid particle  DNA replication  cytosolic ribosome  nuclear membrane  metal ion binding  regulation of fatty acid transport  regulation of glucose import in response to insulin stimulus  
Ontology : EGO-EBIDNA binding  RNA binding  nucleus  nuclear origin of replication recognition complex  lipid particle  DNA replication  cytosolic ribosome  nuclear membrane  metal ion binding  regulation of fatty acid transport  regulation of glucose import in response to insulin stimulus  
NDEx NetworkREPIN1
Atlas of Cancer Signalling NetworkREPIN1
Wikipedia pathwaysREPIN1
Orthology - Evolution
OrthoDB29803
GeneTree (enSembl)ENSG00000214022
Phylogenetic Trees/Animal Genes : TreeFamREPIN1
HOVERGENQ9BWE0
HOGENOMQ9BWE0
Homologs : HomoloGeneREPIN1
Homology/Alignments : Family Browser (UCSC)REPIN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREPIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REPIN1
dbVarREPIN1
ClinVarREPIN1
1000_GenomesREPIN1 
Exome Variant ServerREPIN1
ExAC (Exome Aggregation Consortium)REPIN1 (select the gene name)
Genetic variants : HAPMAP29803
Genomic Variants (DGV)REPIN1 [DGVbeta]
DECIPHERREPIN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREPIN1 
Mutations
ICGC Data PortalREPIN1 
TCGA Data PortalREPIN1 
Broad Tumor PortalREPIN1
OASIS PortalREPIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREPIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREPIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REPIN1
DgiDB (Drug Gene Interaction Database)REPIN1
DoCM (Curated mutations)REPIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REPIN1 (select a term)
intoGenREPIN1
Cancer3DREPIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenREPIN1
Genetic Testing Registry REPIN1
NextProtQ9BWE0 [Medical]
TSGene29803
GENETestsREPIN1
Target ValidationREPIN1
Huge Navigator REPIN1 [HugePedia]
snp3D : Map Gene to Disease29803
BioCentury BCIQREPIN1
ClinGenREPIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29803
Chemical/Pharm GKB GenePA134933473
Clinical trialREPIN1
Miscellaneous
canSAR (ICR)REPIN1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREPIN1
EVEXREPIN1
GoPubMedREPIN1
iHOPREPIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:38 CEST 2017

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