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RER1 (retention in endoplasmic reticulum sorting receptor 1)

Identity

Alias_namesRER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
Other alias-
HGNC (Hugo) RER1
LocusID (NCBI) 11079
Atlas_Id 72580
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2391775 and ends at 2405446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAM10 (15q21.3) / RER1 (1p36.32)RER1 (1p36.32) / KIF26B (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RER1   30309
Cards
Entrez_Gene (NCBI)RER1  11079  retention in endoplasmic reticulum sorting receptor 1
Aliases
GeneCards (Weizmann)RER1
Ensembl hg19 (Hinxton)ENSG00000157916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157916 [Gene_View]  chr1:2391775-2405446 [Contig_View]  RER1 [Vega]
ICGC DataPortalENSG00000157916
TCGA cBioPortalRER1
AceView (NCBI)RER1
Genatlas (Paris)RER1
WikiGenes11079
SOURCE (Princeton)RER1
Genetics Home Reference (NIH)RER1
Genomic and cartography
GoldenPath hg38 (UCSC)RER1  -     chr1:2391775-2405446 +  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RER1  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblRER1 - 1p36.32 [CytoView hg19]  RER1 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIRER1 [Mapview hg19]  RER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF091071 AF157324 AJ001421 AK095750 AK289658
RefSeq transcript (Entrez)NM_007033
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RER1
Cluster EST : UnigeneHs.525527 [ NCBI ]
CGAP (NCI)Hs.525527
Alternative Splicing GalleryENSG00000157916
Gene ExpressionRER1 [ NCBI-GEO ]   RER1 [ EBI - ARRAY_EXPRESS ]   RER1 [ SEEK ]   RER1 [ MEM ]
Gene Expression Viewer (FireBrowse)RER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11079
GTEX Portal (Tissue expression)RER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15258   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15258  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15258
Splice isoforms : SwissVarO15258
PhosPhoSitePlusO15258
Domains : Interpro (EBI)Rer1   
Domain families : Pfam (Sanger)Rer1 (PF03248)   
Domain families : Pfam (NCBI)pfam03248   
Conserved Domain (NCBI)RER1
DMDM Disease mutations11079
Blocks (Seattle)RER1
SuperfamilyO15258
Human Protein AtlasENSG00000157916
Peptide AtlasO15258
HPRD17967
IPIIPI01015125   IPI00005728   IPI00154352   IPI00514229   IPI00647194   
Protein Interaction databases
DIP (DOE-UCLA)O15258
IntAct (EBI)O15258
FunCoupENSG00000157916
BioGRIDRER1
STRING (EMBL)RER1
ZODIACRER1
Ontologies - Pathways
QuickGOO15258
Ontology : AmiGOmolecular_function  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  cell surface  integral component of Golgi membrane  acetylcholine receptor binding  skeletal muscle acetylcholine-gated channel clustering  positive regulation of establishment of protein localization to plasma membrane  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  plasma membrane  retrograde vesicle-mediated transport, Golgi to ER  cell surface  integral component of Golgi membrane  acetylcholine receptor binding  skeletal muscle acetylcholine-gated channel clustering  positive regulation of establishment of protein localization to plasma membrane  
NDEx NetworkRER1
Atlas of Cancer Signalling NetworkRER1
Wikipedia pathwaysRER1
Orthology - Evolution
OrthoDB11079
GeneTree (enSembl)ENSG00000157916
Phylogenetic Trees/Animal Genes : TreeFamRER1
HOVERGENO15258
HOGENOMO15258
Homologs : HomoloGeneRER1
Homology/Alignments : Family Browser (UCSC)RER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RER1
dbVarRER1
ClinVarRER1
1000_GenomesRER1 
Exome Variant ServerRER1
ExAC (Exome Aggregation Consortium)RER1 (select the gene name)
Genetic variants : HAPMAP11079
Genomic Variants (DGV)RER1 [DGVbeta]
DECIPHERRER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRER1 
Mutations
ICGC Data PortalRER1 
TCGA Data PortalRER1 
Broad Tumor PortalRER1
OASIS PortalRER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRER1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RER1
DgiDB (Drug Gene Interaction Database)RER1
DoCM (Curated mutations)RER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RER1 (select a term)
intoGenRER1
Cancer3DRER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRER1
Genetic Testing Registry RER1
NextProtO15258 [Medical]
TSGene11079
GENETestsRER1
Target ValidationRER1
Huge Navigator RER1 [HugePedia]
snp3D : Map Gene to Disease11079
BioCentury BCIQRER1
ClinGenRER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11079
Chemical/Pharm GKB GenePA134901074
Clinical trialRER1
Miscellaneous
canSAR (ICR)RER1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRER1
EVEXRER1
GoPubMedRER1
iHOPRER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:30 CEST 2017

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