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RERE (arginine-glutamic acid dipeptide repeats)

Identity

Alias (NCBI)ARG
ARP
ATN1L
DNB1
NEDBEH
HGNC (Hugo) RERE
HGNC Alias symbKIAA0458
ARP
ARG
DNB1
ATN2
HGNC Alias nameatrophin 2
HGNC Previous nameATN1L
HGNC Previous namearginine-glutamic acid dipeptide (RE) repeats
LocusID (NCBI) 473
Atlas_Id 42083
Location 1p36.23  [Link to chromosome band 1p36]
Location_base_pair Starts at 8352404 and ends at 8817640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP35 (19q13.32) / RERE (1p36.23)C4orf22 (4q21.21) / RERE (1p36.23)ETV6 (12p13.2) / RERE (1p36.23)
FARP1 (13q32.2) / RERE (1p36.23)RERE (1p36.23) / CYP4A11 (1p33)RERE (1p36.23) / GPR157 (1p36.23)
RERE (1p36.23) / LRMP (12p12.1)RERE (1p36.23) / PIK3CD (1p36.22)RERE (1p36.23) / PTGER3 (1p31.1)
RERE (1p36.23) / RERE (1p36.23)RERE (1p36.23) / SLC2A5 (1p36.23)RERE (1p36.23) / TTR (18q12.1)
RERE (1p36.23) / VAMP3 (1p36.23)RERE (1p36.23) / ZSWIM5 (1p34.1)U2AF2 (19q13.42) / RERE (1p36.23)
VPS13D (1p36.22) / RERE (1p36.23)ZFYVE21 (14q32.33) / RERE (1p36.23)RERE 1p36.23 / CYP4A11 1p33
RERE 1p36.23 / GPR157 1p36.23RERE 1p36.23 / SLC2A5 1p36.23RERE 1p36.23 / VAMP3 1p36.23
RERE 1p36.23 / ZSWIM5 1p34.1U2AF2 19q13.42 / RERE 1p36.23VPS13D 1p36.22 / RERE 1p36.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RERE   9965
Cards
Entrez_Gene (NCBI)RERE    arginine-glutamic acid dipeptide repeats
AliasesARG; ARP; ATN1L; DNB1; 
NEDBEH
GeneCards (Weizmann)RERE
Ensembl hg19 (Hinxton)ENSG00000142599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142599 [Gene_View]  ENSG00000142599 [Sequence]  chr1:8352404-8817640 [Contig_View]  RERE [Vega]
ICGC DataPortalENSG00000142599
TCGA cBioPortalRERE
AceView (NCBI)RERE
Genatlas (Paris)RERE
SOURCE (Princeton)RERE
Genetics Home Reference (NIH)RERE
Genomic and cartography
GoldenPath hg38 (UCSC)RERE  -     chr1:8352404-8817640 -  1p36.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RERE  -     1p36.23   [Description]    (hg19-Feb_2009)
GoldenPathRERE - 1p36.23 [CytoView hg19]  RERE - 1p36.23 [CytoView hg38]
ImmunoBaseENSG00000142599
Genome Data Viewer NCBIRERE [Mapview hg19]  
OMIM605226   616975   
Gene and transcription
Genbank (Entrez)AB007927 AB036737 AF016005 AF118275 AK074834
RefSeq transcript (Entrez)NM_001042681 NM_001042682 NM_012102
Consensus coding sequences : CCDS (NCBI)RERE
Gene ExpressionRERE [ NCBI-GEO ]   RERE [ EBI - ARRAY_EXPRESS ]   RERE [ SEEK ]   RERE [ MEM ]
Gene Expression Viewer (FireBrowse)RERE [ Firebrowse - Broad ]
GenevisibleExpression of RERE in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)473
GTEX Portal (Tissue expression)RERE
Human Protein AtlasENSG00000142599-RERE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2R6
PhosPhoSitePlusQ9P2R6
Domaine pattern : Prosite (Expaxy)BAH (PS51038)    ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)Atrophin-like    BAH_dom    ELM2_dom    Homeobox-like_sf    SANT/Myb    SANT_dom    Znf_GATA   
Domain families : Pfam (Sanger)Atrophin-1 (PF03154)    BAH (PF01426)    ELM2 (PF01448)    GATA (PF00320)   
Domain families : Pfam (NCBI)pfam03154    pfam01426    pfam01448    pfam00320   
Domain families : Smart (EMBL)BAH (SM00439)  ELM2 (SM01189)  SANT (SM00717)  ZnF_GATA (SM00401)  
Conserved Domain (NCBI)RERE
PDB (RSDB)2YQK   
PDB Europe2YQK   
PDB (PDBSum)2YQK   
PDB (IMB)2YQK   
Structural Biology KnowledgeBase2YQK   
SCOP (Structural Classification of Proteins)2YQK   
CATH (Classification of proteins structures)2YQK   
SuperfamilyQ9P2R6
AlphaFold pdb e-kbQ9P2R6   
Human Protein Atlas [tissue]ENSG00000142599-RERE [tissue]
HPRD05566
Protein Interaction databases
DIP (DOE-UCLA)Q9P2R6
IntAct (EBI)Q9P2R6
BioGRIDRERE
STRING (EMBL)RERE
ZODIACRERE
Ontologies - Pathways
QuickGOQ9P2R6
Ontology : AmiGOhistone deacetylase complex  chromatin binding  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleus  chromatin remodeling  zinc ion binding  cerebellar Purkinje cell layer maturation  cerebellar granule cell precursor proliferation  radial glia guided migration of Purkinje cell  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  branching morphogenesis of a nerve  dendrite morphogenesis  RNA polymerase II-specific DNA-binding transcription factor binding  
Ontology : EGO-EBIhistone deacetylase complex  chromatin binding  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleus  chromatin remodeling  zinc ion binding  cerebellar Purkinje cell layer maturation  cerebellar granule cell precursor proliferation  radial glia guided migration of Purkinje cell  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  branching morphogenesis of a nerve  dendrite morphogenesis  RNA polymerase II-specific DNA-binding transcription factor binding  
NDEx NetworkRERE
Atlas of Cancer Signalling NetworkRERE
Wikipedia pathwaysRERE
Orthology - Evolution
OrthoDB473
GeneTree (enSembl)ENSG00000142599
Phylogenetic Trees/Animal Genes : TreeFamRERE
Homologs : HomoloGeneRERE
Homology/Alignments : Family Browser (UCSC)RERE
Gene fusions - Rearrangements
Fusion : MitelmanC4orf22/RERE [4q21.21/1p36.23]  
Fusion : MitelmanRERE/CYP4A11 [1p36.23/1p33]  
Fusion : MitelmanRERE/GPR157 [1p36.23/1p36.23]  
Fusion : MitelmanRERE/PIK3CD [1p36.23/1p36.22]  
Fusion : MitelmanRERE/SLC2A5 [1p36.23/1p36.23]  
Fusion : MitelmanRERE/VAMP3 [1p36.23/1p36.23]  
Fusion : MitelmanRERE/ZSWIM5 [1p36.23/1p34.1]  
Fusion : MitelmanU2AF2/RERE [19q13.42/1p36.23]  
Fusion : MitelmanVPS13D/RERE [1p36.22/1p36.23]  
Fusion : QuiverRERE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRERE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RERE
dbVarRERE
ClinVarRERE
MonarchRERE
1000_GenomesRERE 
Exome Variant ServerRERE
GNOMAD BrowserENSG00000142599
Varsome BrowserRERE
ACMGRERE variants
VarityQ9P2R6
Genomic Variants (DGV)RERE [DGVbeta]
DECIPHERRERE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRERE 
Mutations
ICGC Data PortalRERE 
TCGA Data PortalRERE 
Broad Tumor PortalRERE
OASIS PortalRERE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRERE  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRERE
Mutations and Diseases : HGMDRERE
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRERE
DgiDB (Drug Gene Interaction Database)RERE
DoCM (Curated mutations)RERE
CIViC (Clinical Interpretations of Variants in Cancer)RERE
Cancer3DRERE
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605226    616975   
Orphanet
DisGeNETRERE
MedgenRERE
Genetic Testing Registry RERE
NextProtQ9P2R6 [Medical]
GENETestsRERE
Target ValidationRERE
Huge Navigator RERE [HugePedia]
ClinGenRERE
Clinical trials, drugs, therapy
MyCancerGenomeRERE
Protein Interactions : CTDRERE
Pharm GKB GenePA34332
PharosQ9P2R6
Clinical trialRERE
Miscellaneous
canSAR (ICR)RERE
HarmonizomeRERE
DataMed IndexRERE
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRERE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:40 CEST 2021

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