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RERG (RAS like estrogen regulated growth inhibitor)

Identity

Alias_namesRAS-like
Alias_symbol (synonym)MGC15754
Other alias-
HGNC (Hugo) RERG
LocusID (NCBI) 85004
Atlas_Id 42084
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 15107782 and ends at 15221477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX29 (16p13.13) / RERG (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RERG   15980
Cards
Entrez_Gene (NCBI)RERG  85004  RAS like estrogen regulated growth inhibitor
Aliases
GeneCards (Weizmann)RERG
Ensembl hg19 (Hinxton)ENSG00000134533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134533 [Gene_View]  chr12:15107782-15221477 [Contig_View]  RERG [Vega]
ICGC DataPortalENSG00000134533
TCGA cBioPortalRERG
AceView (NCBI)RERG
Genatlas (Paris)RERG
WikiGenes85004
SOURCE (Princeton)RERG
Genetics Home Reference (NIH)RERG
Genomic and cartography
GoldenPath hg38 (UCSC)RERG  -     chr12:15107782-15221477 -  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RERG  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblRERG - 12p12.3 [CytoView hg19]  RERG - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIRERG [Mapview hg19]  RERG [Mapview hg38]
OMIM612664   
Gene and transcription
Genbank (Entrez)AF339750 AI125943 AK295343 AK311016 AK313881
RefSeq transcript (Entrez)NM_001190726 NM_032918
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RERG
Cluster EST : UnigeneHs.199487 [ NCBI ]
CGAP (NCI)Hs.199487
Alternative Splicing GalleryENSG00000134533
Gene ExpressionRERG [ NCBI-GEO ]   RERG [ EBI - ARRAY_EXPRESS ]   RERG [ SEEK ]   RERG [ MEM ]
Gene Expression Viewer (FireBrowse)RERG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85004
GTEX Portal (Tissue expression)RERG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A58
Splice isoforms : SwissVarQ96A58
PhosPhoSitePlusQ96A58
Domaine pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RERG
DMDM Disease mutations85004
Blocks (Seattle)RERG
PDB (SRS)2ATV   
PDB (PDBSum)2ATV   
PDB (IMB)2ATV   
PDB (RSDB)2ATV   
Structural Biology KnowledgeBase2ATV   
SCOP (Structural Classification of Proteins)2ATV   
CATH (Classification of proteins structures)2ATV   
SuperfamilyQ96A58
Human Protein AtlasENSG00000134533
Peptide AtlasQ96A58
HPRD15238
IPIIPI00059267   IPI00979567   IPI01015634   IPI01009812   IPI01016057   
Protein Interaction databases
DIP (DOE-UCLA)Q96A58
IntAct (EBI)Q96A58
FunCoupENSG00000134533
BioGRIDRERG
STRING (EMBL)RERG
ZODIACRERG
Ontologies - Pathways
QuickGOQ96A58
Ontology : AmiGOGTPase activity  GTP binding  nucleus  cytosol  small GTPase mediated signal transduction  negative regulation of cell proliferation  response to hormone  membrane  GDP binding  negative regulation of cell growth  estrogen receptor binding  
Ontology : EGO-EBIGTPase activity  GTP binding  nucleus  cytosol  small GTPase mediated signal transduction  negative regulation of cell proliferation  response to hormone  membrane  GDP binding  negative regulation of cell growth  estrogen receptor binding  
NDEx NetworkRERG
Atlas of Cancer Signalling NetworkRERG
Wikipedia pathwaysRERG
Orthology - Evolution
OrthoDB85004
GeneTree (enSembl)ENSG00000134533
Phylogenetic Trees/Animal Genes : TreeFamRERG
HOVERGENQ96A58
HOGENOMQ96A58
Homologs : HomoloGeneRERG
Homology/Alignments : Family Browser (UCSC)RERG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRERG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RERG
dbVarRERG
ClinVarRERG
1000_GenomesRERG 
Exome Variant ServerRERG
ExAC (Exome Aggregation Consortium)RERG (select the gene name)
Genetic variants : HAPMAP85004
Genomic Variants (DGV)RERG [DGVbeta]
DECIPHERRERG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRERG 
Mutations
ICGC Data PortalRERG 
TCGA Data PortalRERG 
Broad Tumor PortalRERG
OASIS PortalRERG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRERG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRERG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RERG
DgiDB (Drug Gene Interaction Database)RERG
DoCM (Curated mutations)RERG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RERG (select a term)
intoGenRERG
Cancer3DRERG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612664   
Orphanet
MedgenRERG
Genetic Testing Registry RERG
NextProtQ96A58 [Medical]
TSGene85004
GENETestsRERG
Huge Navigator RERG [HugePedia]
snp3D : Map Gene to Disease85004
BioCentury BCIQRERG
ClinGenRERG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85004
Chemical/Pharm GKB GenePA34333
Clinical trialRERG
Miscellaneous
canSAR (ICR)RERG (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRERG
EVEXRERG
GoPubMedRERG
iHOPRERG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:42 CEST 2017

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