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RESF1 (retroelement silencing factor 1)

Identity

Alias (NCBI)C12orf35
GET
KIAA1551
UTA2-1
HGNC (Hugo) RESF1
HGNC Alias symbFLJ20696
FLJ10652
UTA2-1
HGNC Previous nameC12orf35
HGNC Previous namechromosome 12 open reading frame 35
LocusID (NCBI) 55196
Atlas_Id 64889
Location 12p11.21  [Link to chromosome band 12p11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;12)(p13;p11) TSPAN2/KIAA1551
t(12;12)(p11;p12) KIAA1551/SOX5


External links

Nomenclature
HGNC (Hugo)RESF1   25559
Cards
Entrez_Gene (NCBI)RESF1  55196  retroelement silencing factor 1
AliasesC12orf35; GET; KIAA1551; UTA2-1
GeneCards (Weizmann)RESF1
Ensembl hg19 (Hinxton)ENSG00000174718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174718 [Gene_View]  ENSG00000174718 [Sequence]  - [Contig_View]  RESF1 [Vega]
ICGC DataPortalENSG00000174718
TCGA cBioPortalRESF1
AceView (NCBI)RESF1
Genatlas (Paris)RESF1
WikiGenes55196
SOURCE (Princeton)RESF1
Genetics Home Reference (NIH)RESF1
Genomic and cartography
GoldenPath hg38 (UCSC)RESF1  -  
GoldenPath hg19 (UCSC)RESF1  -  
GoldenPathRESF1 - [CytoView hg19]  RESF1 - [CytoView hg38]
ImmunoBaseENSG00000174718
genome Data Viewer NCBIRESF1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB046771 AK000688 AK000703 AK001514 AK092399
RefSeq transcript (Entrez)NM_018169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RESF1
Alternative Splicing GalleryENSG00000174718
Gene ExpressionRESF1 [ NCBI-GEO ]   RESF1 [ EBI - ARRAY_EXPRESS ]   RESF1 [ SEEK ]   RESF1 [ MEM ]
Gene Expression Viewer (FireBrowse)RESF1 [ Firebrowse - Broad ]
GenevisibleExpression of RESF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55196
GTEX Portal (Tissue expression)RESF1
Human Protein AtlasENSG00000174718-RESF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCM1
Splice isoforms : SwissVarQ9HCM1
PhosPhoSitePlusQ9HCM1
Domains : Interpro (EBI)RESF1   
Domain families : Pfam (Sanger)DUF4617 (PF15395)   
Domain families : Pfam (NCBI)pfam15395   
Conserved Domain (NCBI)RESF1
DMDM Disease mutations55196
Blocks (Seattle)RESF1
SuperfamilyQ9HCM1
Human Protein Atlas [tissue]ENSG00000174718-RESF1 [tissue]
Peptide AtlasQ9HCM1
HPRD07691
IPIIPI00018808   IPI01012724   IPI01013187   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCM1
IntAct (EBI)Q9HCM1
FunCoupENSG00000174718
BioGRIDRESF1
STRING (EMBL)RESF1
ZODIACRESF1
Ontologies - Pathways
QuickGOQ9HCM1
Ontology : AmiGOgamma-tubulin complex  nucleus  histone binding  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  positive regulation of methylation-dependent chromatin silencing  
Ontology : EGO-EBIgamma-tubulin complex  nucleus  histone binding  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  positive regulation of methylation-dependent chromatin silencing  
NDEx NetworkRESF1
Atlas of Cancer Signalling NetworkRESF1
Wikipedia pathwaysRESF1
Orthology - Evolution
OrthoDB55196
GeneTree (enSembl)ENSG00000174718
Phylogenetic Trees/Animal Genes : TreeFamRESF1
HOGENOMQ9HCM1
Homologs : HomoloGeneRESF1
Homology/Alignments : Family Browser (UCSC)RESF1
Gene fusions - Rearrangements
Fusion : QuiverRESF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRESF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RESF1
dbVarRESF1
ClinVarRESF1
1000_GenomesRESF1 
Exome Variant ServerRESF1
GNOMAD BrowserENSG00000174718
Varsome BrowserRESF1
Genetic variants : HAPMAP55196
Genomic Variants (DGV)RESF1 [DGVbeta]
DECIPHERRESF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRESF1 
Mutations
ICGC Data PortalRESF1 
TCGA Data PortalRESF1 
Broad Tumor PortalRESF1
OASIS PortalRESF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRESF1
BioMutasearch RESF1
DgiDB (Drug Gene Interaction Database)RESF1
DoCM (Curated mutations)RESF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RESF1 (select a term)
intoGenRESF1
Cancer3DRESF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRESF1
MedgenRESF1
Genetic Testing Registry RESF1
NextProtQ9HCM1 [Medical]
TSGene55196
GENETestsRESF1
Target ValidationRESF1
Huge Navigator RESF1 [HugePedia]
snp3D : Map Gene to Disease55196
BioCentury BCIQRESF1
ClinGenRESF1
Clinical trials, drugs, therapy
Protein Interactions : CTD55196
Pharm GKB GenePA143485365
Clinical trialRESF1
Miscellaneous
canSAR (ICR)RESF1 (select the gene name)
HarmonizomeRESF1
DataMed IndexRESF1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRESF1
EVEXRESF1
GoPubMedRESF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:04:23 CEST 2020

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