Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RETN (resistin)

Identity

Alias_symbol (synonym)FIZZ3
ADSF
RETN1
Other aliasRSTN
XCP1
HGNC (Hugo) RETN
LocusID (NCBI) 56729
Atlas_Id 46161
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7733972 and ends at 7735340 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RETN   20389
Cards
Entrez_Gene (NCBI)RETN  56729  resistin
AliasesADSF; FIZZ3; RETN1; RSTN; 
XCP1
GeneCards (Weizmann)RETN
Ensembl hg19 (Hinxton)ENSG00000104918 [Gene_View]  chr19:7733972-7735340 [Contig_View]  RETN [Vega]
Ensembl hg38 (Hinxton)ENSG00000104918 [Gene_View]  chr19:7733972-7735340 [Contig_View]  RETN [Vega]
ICGC DataPortalENSG00000104918
TCGA cBioPortalRETN
AceView (NCBI)RETN
Genatlas (Paris)RETN
WikiGenes56729
SOURCE (Princeton)RETN
Genetics Home Reference (NIH)RETN
Genomic and cartography
GoldenPath hg19 (UCSC)RETN  -     chr19:7733972-7735340 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RETN  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblRETN - 19p13.2 [CytoView hg19]  RETN - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRETN [Mapview hg19]  RETN [Mapview hg38]
OMIM125853   605565   
Gene and transcription
Genbank (Entrez)AB111910 AF205952 AF290874 AF323081 AY207314
RefSeq transcript (Entrez)NM_001193374 NM_020415
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_023447 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)RETN
Cluster EST : UnigeneHs.283091 [ NCBI ]
CGAP (NCI)Hs.283091
Alternative Splicing GalleryENSG00000104918
Gene ExpressionRETN [ NCBI-GEO ]   RETN [ EBI - ARRAY_EXPRESS ]   RETN [ SEEK ]   RETN [ MEM ]
Gene Expression Viewer (FireBrowse)RETN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56729
GTEX Portal (Tissue expression)RETN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD89
Splice isoforms : SwissVarQ9HD89
PhosPhoSitePlusQ9HD89
Domains : Interpro (EBI)Resistin   
Domain families : Pfam (Sanger)Resistin (PF06954)   
Domain families : Pfam (NCBI)pfam06954   
Conserved Domain (NCBI)RETN
DMDM Disease mutations56729
Blocks (Seattle)RETN
PDB (SRS)1LV6   
PDB (PDBSum)1LV6   
PDB (IMB)1LV6   
PDB (RSDB)1LV6   
Structural Biology KnowledgeBase1LV6   
SCOP (Structural Classification of Proteins)1LV6   
CATH (Classification of proteins structures)1LV6   
SuperfamilyQ9HD89
Human Protein AtlasENSG00000104918
Peptide AtlasQ9HD89
HPRD05714
IPIIPI00006988   IPI00444544   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD89
IntAct (EBI)Q9HD89
FunCoupENSG00000104918
BioGRIDRETN
STRING (EMBL)RETN
ZODIACRETN
Ontologies - Pathways
QuickGOQ9HD89
Ontology : AmiGOhormone activity  extracellular space  nucleus  aging  biological_process  response to mechanical stimulus  positive regulation of collagen metabolic process  positive regulation of smooth muscle cell migration  response to insulin  fat cell differentiation  positive regulation of smooth muscle cell proliferation  positive regulation of synaptic transmission  extracellular exosome  negative regulation of feeding behavior  positive regulation of progesterone secretion  
Ontology : EGO-EBIhormone activity  extracellular space  nucleus  aging  biological_process  response to mechanical stimulus  positive regulation of collagen metabolic process  positive regulation of smooth muscle cell migration  response to insulin  fat cell differentiation  positive regulation of smooth muscle cell proliferation  positive regulation of synaptic transmission  extracellular exosome  negative regulation of feeding behavior  positive regulation of progesterone secretion  
Pathways : BIOCARTAVisceral Fat Deposits and the Metabolic Syndrome [Genes]   
NDEx NetworkRETN
Atlas of Cancer Signalling NetworkRETN
Wikipedia pathwaysRETN
Orthology - Evolution
OrthoDB56729
GeneTree (enSembl)ENSG00000104918
Phylogenetic Trees/Animal Genes : TreeFamRETN
HOVERGENQ9HD89
HOGENOMQ9HD89
Homologs : HomoloGeneRETN
Homology/Alignments : Family Browser (UCSC)RETN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRETN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RETN
dbVarRETN
ClinVarRETN
1000_GenomesRETN 
Exome Variant ServerRETN
ExAC (Exome Aggregation Consortium)RETN (select the gene name)
Genetic variants : HAPMAP56729
Genomic Variants (DGV)RETN [DGVbeta]
DECIPHER (Syndromes)19:7733972-7735340  ENSG00000104918
CONAN: Copy Number AnalysisRETN 
Mutations
ICGC Data PortalRETN 
TCGA Data PortalRETN 
Broad Tumor PortalRETN
OASIS PortalRETN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRETN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRETN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RETN
DgiDB (Drug Gene Interaction Database)RETN
DoCM (Curated mutations)RETN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RETN (select a term)
intoGenRETN
Cancer3DRETN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125853    605565   
Orphanet
MedgenRETN
Genetic Testing Registry RETN
NextProtQ9HD89 [Medical]
TSGene56729
GENETestsRETN
Huge Navigator RETN [HugePedia]
snp3D : Map Gene to Disease56729
BioCentury BCIQRETN
ClinGenRETN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56729
Chemical/Pharm GKB GenePA422
Clinical trialRETN
Miscellaneous
canSAR (ICR)RETN (select the gene name)
Probes
Litterature
PubMed431 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRETN
EVEXRETN
GoPubMedRETN
iHOPRETN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:14 CEST 2017

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