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RETREG2 (reticulophagy regulator family member 2)

Identity

Other aliasC2orf17
FAM134A
MAG-2
HGNC (Hugo) RETREG2
LocusID (NCBI) 79137
Atlas_Id 56795
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219178190 and ends at 219185475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RETREG2   28450
Cards
Entrez_Gene (NCBI)RETREG2  79137  reticulophagy regulator family member 2
AliasesC2orf17; FAM134A; MAG-2
GeneCards (Weizmann)RETREG2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:219178190-219185475 [Contig_View]  RETREG2 [Vega]
TCGA cBioPortalRETREG2
AceView (NCBI)RETREG2
Genatlas (Paris)RETREG2
WikiGenes79137
SOURCE (Princeton)RETREG2
Genetics Home Reference (NIH)RETREG2
Genomic and cartography
GoldenPath hg38 (UCSC)RETREG2  -     chr2:219178190-219185475 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RETREG2  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblRETREG2 - 2q35 [CytoView hg19]  RETREG2 - 2q35 [CytoView hg38]
Mapping of homologs : NCBIRETREG2 [Mapview hg19]  RETREG2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026155 AK074983 AK091011 AL136758 AL832843
RefSeq transcript (Entrez)NM_001321109 NM_001321110 NM_024293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RETREG2
Cluster EST : UnigeneHs.516707 [ NCBI ]
CGAP (NCI)Hs.516707
Gene ExpressionRETREG2 [ NCBI-GEO ]   RETREG2 [ EBI - ARRAY_EXPRESS ]   RETREG2 [ SEEK ]   RETREG2 [ MEM ]
Gene Expression Viewer (FireBrowse)RETREG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79137
GTEX Portal (Tissue expression)RETREG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC44
Splice isoforms : SwissVarQ8NC44
PhosPhoSitePlusQ8NC44
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RETREG2
DMDM Disease mutations79137
Blocks (Seattle)RETREG2
SuperfamilyQ8NC44
Peptide AtlasQ8NC44
IPIIPI00301294   IPI00902997   IPI00915944   IPI00916843   IPI00917014   IPI00916516   IPI00917318   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC44
IntAct (EBI)Q8NC44
BioGRIDRETREG2
STRING (EMBL)RETREG2
ZODIACRETREG2
Ontologies - Pathways
QuickGOQ8NC44
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkRETREG2
Atlas of Cancer Signalling NetworkRETREG2
Wikipedia pathwaysRETREG2
Orthology - Evolution
OrthoDB79137
Phylogenetic Trees/Animal Genes : TreeFamRETREG2
HOVERGENQ8NC44
HOGENOMQ8NC44
Homologs : HomoloGeneRETREG2
Homology/Alignments : Family Browser (UCSC)RETREG2
Gene fusions - Rearrangements
Tumor Fusion PortalRETREG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRETREG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RETREG2
dbVarRETREG2
ClinVarRETREG2
1000_GenomesRETREG2 
Exome Variant ServerRETREG2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79137
Genomic Variants (DGV)RETREG2 [DGVbeta]
DECIPHERRETREG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRETREG2 
Mutations
ICGC Data PortalRETREG2 
TCGA Data PortalRETREG2 
Broad Tumor PortalRETREG2
OASIS PortalRETREG2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRETREG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RETREG2
DgiDB (Drug Gene Interaction Database)RETREG2
DoCM (Curated mutations)RETREG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RETREG2 (select a term)
intoGenRETREG2
Cancer3DRETREG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRETREG2
MedgenRETREG2
Genetic Testing Registry RETREG2
NextProtQ8NC44 [Medical]
TSGene79137
GENETestsRETREG2
Target ValidationRETREG2
Huge Navigator RETREG2 [HugePedia]
snp3D : Map Gene to Disease79137
BioCentury BCIQRETREG2
ClinGenRETREG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79137
Chemical/Pharm GKB GenePA162386165
Clinical trialRETREG2
Miscellaneous
canSAR (ICR)RETREG2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRETREG2
EVEXRETREG2
GoPubMedRETREG2
iHOPRETREG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:56:02 CET 2017

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