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RETREG3 (reticulophagy regulator family member 3)

Identity

Other aliasFAM134C
HGNC (Hugo) RETREG3
LocusID (NCBI) 162427
Atlas_Id 56844
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42579508 and ends at 42609427 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RETREG3   27258
Cards
Entrez_Gene (NCBI)RETREG3  162427  reticulophagy regulator family member 3
AliasesFAM134C
GeneCards (Weizmann)RETREG3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:42579508-42609427 [Contig_View]  RETREG3 [Vega]
TCGA cBioPortalRETREG3
AceView (NCBI)RETREG3
Genatlas (Paris)RETREG3
WikiGenes162427
SOURCE (Princeton)RETREG3
Genetics Home Reference (NIH)RETREG3
Genomic and cartography
GoldenPath hg38 (UCSC)RETREG3  -     chr17:42579508-42609427 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RETREG3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblRETREG3 - 17q21.2 [CytoView hg19]  RETREG3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIRETREG3 [Mapview hg19]  RETREG3 [Mapview hg38]
OMIM616498   
Gene and transcription
Genbank (Entrez)AI307353 AK057409 AK091125 AK225797 AK294791
RefSeq transcript (Entrez)NM_178126
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RETREG3
Cluster EST : UnigeneHs.632262 [ NCBI ]
CGAP (NCI)Hs.632262
Gene ExpressionRETREG3 [ NCBI-GEO ]   RETREG3 [ EBI - ARRAY_EXPRESS ]   RETREG3 [ SEEK ]   RETREG3 [ MEM ]
Gene Expression Viewer (FireBrowse)RETREG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162427
GTEX Portal (Tissue expression)RETREG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VR2
Splice isoforms : SwissVarQ86VR2
PhosPhoSitePlusQ86VR2
Domains : Interpro (EBI)FAM134C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RETREG3
DMDM Disease mutations162427
Blocks (Seattle)RETREG3
SuperfamilyQ86VR2
Peptide AtlasQ86VR2
IPIIPI00254338   IPI01014427   
Protein Interaction databases
DIP (DOE-UCLA)Q86VR2
IntAct (EBI)Q86VR2
BioGRIDRETREG3
STRING (EMBL)RETREG3
ZODIACRETREG3
Ontologies - Pathways
QuickGOQ86VR2
Ontology : AmiGOprotein binding  positive regulation of neuron projection development  integral component of membrane  
Ontology : EGO-EBIprotein binding  positive regulation of neuron projection development  integral component of membrane  
NDEx NetworkRETREG3
Atlas of Cancer Signalling NetworkRETREG3
Wikipedia pathwaysRETREG3
Orthology - Evolution
OrthoDB162427
Phylogenetic Trees/Animal Genes : TreeFamRETREG3
HOVERGENQ86VR2
HOGENOMQ86VR2
Homologs : HomoloGeneRETREG3
Homology/Alignments : Family Browser (UCSC)RETREG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRETREG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RETREG3
dbVarRETREG3
ClinVarRETREG3
1000_GenomesRETREG3 
Exome Variant ServerRETREG3
ExAC (Exome Aggregation Consortium)RETREG3 (select the gene name)
Genetic variants : HAPMAP162427
Genomic Variants (DGV)RETREG3 [DGVbeta]
DECIPHERRETREG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRETREG3 
Mutations
ICGC Data PortalRETREG3 
TCGA Data PortalRETREG3 
Broad Tumor PortalRETREG3
OASIS PortalRETREG3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRETREG3
BioMutasearch RETREG3
DgiDB (Drug Gene Interaction Database)RETREG3
DoCM (Curated mutations)RETREG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RETREG3 (select a term)
intoGenRETREG3
Cancer3DRETREG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616498   
Orphanet
MedgenRETREG3
Genetic Testing Registry RETREG3
NextProtQ86VR2 [Medical]
TSGene162427
GENETestsRETREG3
Target ValidationRETREG3
Huge Navigator RETREG3 [HugePedia]
snp3D : Map Gene to Disease162427
BioCentury BCIQRETREG3
ClinGenRETREG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162427
Chemical/Pharm GKB GenePA162386207
Clinical trialRETREG3
Miscellaneous
canSAR (ICR)RETREG3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRETREG3
EVEXRETREG3
GoPubMedRETREG3
iHOPRETREG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:32 CEST 2017

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