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RETSAT (retinol saturase)

Identity

Alias_symbol (synonym)FLJ20296
Other alias-
HGNC (Hugo) RETSAT
LocusID (NCBI) 54884
Atlas_Id 72584
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85341955 and ends at 85354698 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RETSAT (2p11.2) / HADHB (2p23.3)RETSAT (2p11.2) / HLA-DRB5 (6p21.32)TMEM151B (6p21.1) / RETSAT (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RETSAT   25991
Cards
Entrez_Gene (NCBI)RETSAT  54884  retinol saturase
Aliases
GeneCards (Weizmann)RETSAT
Ensembl hg19 (Hinxton)ENSG00000042445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000042445 [Gene_View]  chr2:85341955-85354698 [Contig_View]  RETSAT [Vega]
ICGC DataPortalENSG00000042445
TCGA cBioPortalRETSAT
AceView (NCBI)RETSAT
Genatlas (Paris)RETSAT
WikiGenes54884
SOURCE (Princeton)RETSAT
Genetics Home Reference (NIH)RETSAT
Genomic and cartography
GoldenPath hg38 (UCSC)RETSAT  -     chr2:85341955-85354698 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RETSAT  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblRETSAT - 2p11.2 [CytoView hg19]  RETSAT - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRETSAT [Mapview hg19]  RETSAT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000303 AK075261 AK225305 AK296522 AL833237
RefSeq transcript (Entrez)NM_017750
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RETSAT
Cluster EST : UnigeneHs.440401 [ NCBI ]
CGAP (NCI)Hs.440401
Alternative Splicing GalleryENSG00000042445
Gene ExpressionRETSAT [ NCBI-GEO ]   RETSAT [ EBI - ARRAY_EXPRESS ]   RETSAT [ SEEK ]   RETSAT [ MEM ]
Gene Expression Viewer (FireBrowse)RETSAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54884
GTEX Portal (Tissue expression)RETSAT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUM9
Splice isoforms : SwissVarQ6NUM9
Catalytic activity : Enzyme1.3.99.23 [ Enzyme-Expasy ]   1.3.99.231.3.99.23 [ IntEnz-EBI ]   1.3.99.23 [ BRENDA ]   1.3.99.23 [ KEGG ]   
PhosPhoSitePlusQ6NUM9
Domains : Interpro (EBI)FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RETSAT
DMDM Disease mutations54884
Blocks (Seattle)RETSAT
SuperfamilyQ6NUM9
Human Protein AtlasENSG00000042445
Peptide AtlasQ6NUM9
HPRD07893
IPIIPI00296157   IPI00335161   IPI00909005   IPI00915989   IPI01014361   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUM9
IntAct (EBI)Q6NUM9
FunCoupENSG00000042445
BioGRIDRETSAT
STRING (EMBL)RETSAT
ZODIACRETSAT
Ontologies - Pathways
QuickGOQ6NUM9
Ontology : AmiGOnuclear outer membrane  endoplasmic reticulum membrane  membrane  oxidoreductase activity  nuclear membrane  retinol metabolic process  all-trans-retinol 13,14-reductase activity  oxidation-reduction process  
Ontology : EGO-EBInuclear outer membrane  endoplasmic reticulum membrane  membrane  oxidoreductase activity  nuclear membrane  retinol metabolic process  all-trans-retinol 13,14-reductase activity  oxidation-reduction process  
Pathways : KEGGRetinol metabolism   
NDEx NetworkRETSAT
Atlas of Cancer Signalling NetworkRETSAT
Wikipedia pathwaysRETSAT
Orthology - Evolution
OrthoDB54884
GeneTree (enSembl)ENSG00000042445
Phylogenetic Trees/Animal Genes : TreeFamRETSAT
HOVERGENQ6NUM9
HOGENOMQ6NUM9
Homologs : HomoloGeneRETSAT
Homology/Alignments : Family Browser (UCSC)RETSAT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRETSAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RETSAT
dbVarRETSAT
ClinVarRETSAT
1000_GenomesRETSAT 
Exome Variant ServerRETSAT
ExAC (Exome Aggregation Consortium)RETSAT (select the gene name)
Genetic variants : HAPMAP54884
Genomic Variants (DGV)RETSAT [DGVbeta]
DECIPHERRETSAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRETSAT 
Mutations
ICGC Data PortalRETSAT 
TCGA Data PortalRETSAT 
Broad Tumor PortalRETSAT
OASIS PortalRETSAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRETSAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRETSAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RETSAT
DgiDB (Drug Gene Interaction Database)RETSAT
DoCM (Curated mutations)RETSAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RETSAT (select a term)
intoGenRETSAT
Cancer3DRETSAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRETSAT
Genetic Testing Registry RETSAT
NextProtQ6NUM9 [Medical]
TSGene54884
GENETestsRETSAT
Huge Navigator RETSAT [HugePedia]
snp3D : Map Gene to Disease54884
BioCentury BCIQRETSAT
ClinGenRETSAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54884
Chemical/Pharm GKB GenePA145007867
Clinical trialRETSAT
Miscellaneous
canSAR (ICR)RETSAT (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRETSAT
EVEXRETSAT
GoPubMedRETSAT
iHOPRETSAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:48 CEST 2017

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