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REX1BD (required for excision 1-B domain containing)

Identity

Alias_namesC19orf60
chromosome 19 open reading frame 60
Alias_symbol (synonym)FLJ20850
FLJ30108
FLJ34606
FLJ37391
Other alias
HGNC (Hugo) REX1BD
LocusID (NCBI) 55049
Atlas_Id 79506
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18588685 and ends at 18592337 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)REX1BD   26098
Cards
Entrez_Gene (NCBI)REX1BD  55049  required for excision 1-B domain containing
AliasesC19orf60
GeneCards (Weizmann)REX1BD
Ensembl hg19 (Hinxton)ENSG00000006015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006015 [Gene_View]  chr19:18588685-18592337 [Contig_View]  REX1BD [Vega]
ICGC DataPortalENSG00000006015
TCGA cBioPortalREX1BD
AceView (NCBI)REX1BD
Genatlas (Paris)REX1BD
WikiGenes55049
SOURCE (Princeton)REX1BD
Genetics Home Reference (NIH)REX1BD
Genomic and cartography
GoldenPath hg38 (UCSC)REX1BD  -     chr19:18588685-18592337 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REX1BD  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblREX1BD - 19p13.11 [CytoView hg19]  REX1BD - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIREX1BD [Mapview hg19]  REX1BD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000857 AK054670 AK091925 AK094710 BC012078
RefSeq transcript (Entrez)NM_001100418 NM_001100419 NM_017967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REX1BD
Cluster EST : UnigeneHs.655317 [ NCBI ]
CGAP (NCI)Hs.655317
Alternative Splicing GalleryENSG00000006015
Gene ExpressionREX1BD [ NCBI-GEO ]   REX1BD [ EBI - ARRAY_EXPRESS ]   REX1BD [ SEEK ]   REX1BD [ MEM ]
Gene Expression Viewer (FireBrowse)REX1BD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55049
GTEX Portal (Tissue expression)REX1BD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EN9
Splice isoforms : SwissVarQ96EN9
PhosPhoSitePlusQ96EN9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)REX1BD
DMDM Disease mutations55049
Blocks (Seattle)REX1BD
SuperfamilyQ96EN9
Human Protein AtlasENSG00000006015
Peptide AtlasQ96EN9
IPIIPI00101267   IPI00953361   IPI00856068   
Protein Interaction databases
DIP (DOE-UCLA)Q96EN9
IntAct (EBI)Q96EN9
FunCoupENSG00000006015
BioGRIDREX1BD
STRING (EMBL)REX1BD
ZODIACREX1BD
Ontologies - Pathways
QuickGOQ96EN9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkREX1BD
Atlas of Cancer Signalling NetworkREX1BD
Wikipedia pathwaysREX1BD
Orthology - Evolution
OrthoDB55049
GeneTree (enSembl)ENSG00000006015
Phylogenetic Trees/Animal Genes : TreeFamREX1BD
HOVERGENQ96EN9
HOGENOMQ96EN9
Homologs : HomoloGeneREX1BD
Homology/Alignments : Family Browser (UCSC)REX1BD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREX1BD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REX1BD
dbVarREX1BD
ClinVarREX1BD
1000_GenomesREX1BD 
Exome Variant ServerREX1BD
ExAC (Exome Aggregation Consortium)REX1BD (select the gene name)
Genetic variants : HAPMAP55049
Genomic Variants (DGV)REX1BD [DGVbeta]
DECIPHERREX1BD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREX1BD 
Mutations
ICGC Data PortalREX1BD 
TCGA Data PortalREX1BD 
Broad Tumor PortalREX1BD
OASIS PortalREX1BD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDREX1BD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REX1BD
DgiDB (Drug Gene Interaction Database)REX1BD
DoCM (Curated mutations)REX1BD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REX1BD (select a term)
intoGenREX1BD
Cancer3DREX1BD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenREX1BD
Genetic Testing Registry REX1BD
NextProtQ96EN9 [Medical]
TSGene55049
GENETestsREX1BD
Target ValidationREX1BD
Huge Navigator REX1BD [HugePedia]
snp3D : Map Gene to Disease55049
BioCentury BCIQREX1BD
ClinGenREX1BD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55049
Chemical/Pharm GKB GenePA162378719
Clinical trialREX1BD
Miscellaneous
canSAR (ICR)REX1BD (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREX1BD
EVEXREX1BD
GoPubMedREX1BD
iHOPREX1BD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:04 CEST 2017

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