Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

REXO1 (RNA exonuclease 1 homolog)

Identity

Alias_namesTCEB3BP1
transcription elongation factor B polypeptide 3 binding protein 1
REX1, RNA exonuclease 1 homolog (S. cerevisiae)
Alias_symbol (synonym)EloA-BP1
KIAA1138
Other aliasELOABP1
REX1
HGNC (Hugo) REXO1
LocusID (NCBI) 57455
Atlas_Id 56118
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1815246 and ends at 1848453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
REXO1 (19p13.3) / REXO1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REXO1   24616
Cards
Entrez_Gene (NCBI)REXO1  57455  RNA exonuclease 1 homolog
AliasesELOABP1; EloA-BP1; REX1; TCEB3BP1
GeneCards (Weizmann)REXO1
Ensembl hg19 (Hinxton)ENSG00000079313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079313 [Gene_View]  chr19:1815246-1848453 [Contig_View]  REXO1 [Vega]
ICGC DataPortalENSG00000079313
TCGA cBioPortalREXO1
AceView (NCBI)REXO1
Genatlas (Paris)REXO1
WikiGenes57455
SOURCE (Princeton)REXO1
Genetics Home Reference (NIH)REXO1
Genomic and cartography
GoldenPath hg38 (UCSC)REXO1  -     chr19:1815246-1848453 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REXO1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblREXO1 - 19p13.3 [CytoView hg19]  REXO1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIREXO1 [Mapview hg19]  REXO1 [Mapview hg38]
OMIM609614   
Gene and transcription
Genbank (Entrez)AB032964 AK301030 AK301729 AK302362 AK308256
RefSeq transcript (Entrez)NM_020695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REXO1
Cluster EST : UnigeneHs.192477 [ NCBI ]
CGAP (NCI)Hs.192477
Alternative Splicing GalleryENSG00000079313
Gene ExpressionREXO1 [ NCBI-GEO ]   REXO1 [ EBI - ARRAY_EXPRESS ]   REXO1 [ SEEK ]   REXO1 [ MEM ]
Gene Expression Viewer (FireBrowse)REXO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57455
GTEX Portal (Tissue expression)REXO1
Human Protein AtlasENSG00000079313-REXO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1G1
Splice isoforms : SwissVarQ8N1G1
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ8N1G1
Domains : Interpro (EBI)EloA-BP1    Exonuclease_RNaseT/DNA_pol3    RNaseH-like_dom   
Domain families : Pfam (Sanger)EloA-BP1 (PF15870)   
Domain families : Pfam (NCBI)pfam15870   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)REXO1
DMDM Disease mutations57455
Blocks (Seattle)REXO1
SuperfamilyQ8N1G1
Human Protein Atlas [tissue]ENSG00000079313-REXO1 [tissue]
Peptide AtlasQ8N1G1
HPRD15478
IPIIPI00297396   IPI00910590   IPI01018140   IPI01013050   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1G1
IntAct (EBI)Q8N1G1
FunCoupENSG00000079313
BioGRIDREXO1
STRING (EMBL)REXO1
ZODIACREXO1
Ontologies - Pathways
QuickGOQ8N1G1
Ontology : AmiGOnucleic acid binding  exonuclease activity  nucleoplasm  nuclear body  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleic acid binding  exonuclease activity  nucleoplasm  nuclear body  nucleic acid phosphodiester bond hydrolysis  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkREXO1
Atlas of Cancer Signalling NetworkREXO1
Wikipedia pathwaysREXO1
Orthology - Evolution
OrthoDB57455
GeneTree (enSembl)ENSG00000079313
Phylogenetic Trees/Animal Genes : TreeFamREXO1
HOVERGENQ8N1G1
HOGENOMQ8N1G1
Homologs : HomoloGeneREXO1
Homology/Alignments : Family Browser (UCSC)REXO1
Gene fusions - Rearrangements
Fusion: Tumor Portal REXO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREXO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REXO1
dbVarREXO1
ClinVarREXO1
1000_GenomesREXO1 
Exome Variant ServerREXO1
ExAC (Exome Aggregation Consortium)ENSG00000079313
GNOMAD BrowserENSG00000079313
Genetic variants : HAPMAP57455
Genomic Variants (DGV)REXO1 [DGVbeta]
DECIPHERREXO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREXO1 
Mutations
ICGC Data PortalREXO1 
TCGA Data PortalREXO1 
Broad Tumor PortalREXO1
OASIS PortalREXO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREXO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDREXO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REXO1
DgiDB (Drug Gene Interaction Database)REXO1
DoCM (Curated mutations)REXO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REXO1 (select a term)
intoGenREXO1
Cancer3DREXO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609614   
Orphanet
MedgenREXO1
Genetic Testing Registry REXO1
NextProtQ8N1G1 [Medical]
TSGene57455
GENETestsREXO1
Target ValidationREXO1
Huge Navigator REXO1 [HugePedia]
snp3D : Map Gene to Disease57455
BioCentury BCIQREXO1
ClinGenREXO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57455
Chemical/Pharm GKB GenePA142671077
Clinical trialREXO1
Miscellaneous
canSAR (ICR)REXO1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREXO1
EVEXREXO1
GoPubMedREXO1
iHOPREXO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:08:28 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.