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REXO1 (RNA exonuclease 1 homolog)

Identity

Alias (NCBI)ELOABP1
EloA-BP1
REX1
TCEB3BP1
HGNC (Hugo) REXO1
HGNC Alias symbEloA-BP1
KIAA1138
HGNC Alias nameelongin A binding protein 1
HGNC Previous nameTCEB3BP1
HGNC Previous nametranscription elongation factor B polypeptide 3 binding protein 1
 REX1, RNA exonuclease 1 homolog (S. cerevisiae)
LocusID (NCBI) 57455
Atlas_Id 56118
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1815248 and ends at 1848483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
REXO1 (19p13.3) / REXO1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)REXO1   24616
Cards
Entrez_Gene (NCBI)REXO1    RNA exonuclease 1 homolog
AliasesELOABP1; EloA-BP1; REX1; TCEB3BP1
GeneCards (Weizmann)REXO1
Ensembl hg19 (Hinxton)ENSG00000079313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079313 [Gene_View]  ENSG00000079313 [Sequence]  chr19:1815248-1848483 [Contig_View]  REXO1 [Vega]
ICGC DataPortalENSG00000079313
TCGA cBioPortalREXO1
AceView (NCBI)REXO1
Genatlas (Paris)REXO1
SOURCE (Princeton)REXO1
Genetics Home Reference (NIH)REXO1
Genomic and cartography
GoldenPath hg38 (UCSC)REXO1  -     chr19:1815248-1848483 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REXO1  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathREXO1 - 19p13.3 [CytoView hg19]  REXO1 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000079313
Genome Data Viewer NCBIREXO1 [Mapview hg19]  
OMIM609614   
Gene and transcription
Genbank (Entrez)AB032964 AK301030 AK301729 AK302362 AK308256
RefSeq transcript (Entrez)NM_020695
Consensus coding sequences : CCDS (NCBI)REXO1
Gene ExpressionREXO1 [ NCBI-GEO ]   REXO1 [ EBI - ARRAY_EXPRESS ]   REXO1 [ SEEK ]   REXO1 [ MEM ]
Gene Expression Viewer (FireBrowse)REXO1 [ Firebrowse - Broad ]
GenevisibleExpression of REXO1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57455
GTEX Portal (Tissue expression)REXO1
Human Protein AtlasENSG00000079313-REXO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1G1
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8N1G1
Domains : Interpro (EBI)EloA-BP1    Exonuclease_RNaseT/DNA_pol3    REX1-like_exo    RNaseH-like_sf    RNaseH_sf   
Domain families : Pfam (Sanger)EloA-BP1 (PF15870)   
Domain families : Pfam (NCBI)pfam15870   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)REXO1
SuperfamilyQ8N1G1
AlphaFold pdb e-kbQ8N1G1   
Human Protein Atlas [tissue]ENSG00000079313-REXO1 [tissue]
HPRD15478
Protein Interaction databases
DIP (DOE-UCLA)Q8N1G1
IntAct (EBI)Q8N1G1
BioGRIDREXO1
STRING (EMBL)REXO1
ZODIACREXO1
Ontologies - Pathways
QuickGOQ8N1G1
Ontology : AmiGOnucleic acid binding  exonuclease activity  nucleus  nucleoplasm  nuclear body  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleic acid binding  exonuclease activity  nucleus  nucleoplasm  nuclear body  nucleic acid phosphodiester bond hydrolysis  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkREXO1
Atlas of Cancer Signalling NetworkREXO1
Wikipedia pathwaysREXO1
Orthology - Evolution
OrthoDB57455
GeneTree (enSembl)ENSG00000079313
Phylogenetic Trees/Animal Genes : TreeFamREXO1
Homologs : HomoloGeneREXO1
Homology/Alignments : Family Browser (UCSC)REXO1
Gene fusions - Rearrangements
Fusion : QuiverREXO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREXO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REXO1
dbVarREXO1
ClinVarREXO1
MonarchREXO1
1000_GenomesREXO1 
Exome Variant ServerREXO1
GNOMAD BrowserENSG00000079313
Varsome BrowserREXO1
ACMGREXO1 variants
VarityQ8N1G1
Genomic Variants (DGV)REXO1 [DGVbeta]
DECIPHERREXO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREXO1 
Mutations
ICGC Data PortalREXO1 
TCGA Data PortalREXO1 
Broad Tumor PortalREXO1
OASIS PortalREXO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICREXO1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DREXO1
Mutations and Diseases : HGMDREXO1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaREXO1
DgiDB (Drug Gene Interaction Database)REXO1
DoCM (Curated mutations)REXO1
CIViC (Clinical Interpretations of Variants in Cancer)REXO1
Cancer3DREXO1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609614   
Orphanet
DisGeNETREXO1
MedgenREXO1
Genetic Testing Registry REXO1
NextProtQ8N1G1 [Medical]
GENETestsREXO1
Target ValidationREXO1
Huge Navigator REXO1 [HugePedia]
ClinGenREXO1
Clinical trials, drugs, therapy
MyCancerGenomeREXO1
Protein Interactions : CTDREXO1
Pharm GKB GenePA142671077
PharosQ8N1G1
Clinical trialREXO1
Miscellaneous
canSAR (ICR)REXO1
HarmonizomeREXO1
DataMed IndexREXO1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXREXO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:42 CEST 2021

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