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REXO1L1P (REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene)

Identity

Alias_namesREXO1L1
REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1
REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene
Alias_symbol (synonym)GOR
Other alias
HGNC (Hugo) REXO1L1P
LocusID (NCBI) 254958
Atlas_Id 72586
Location 8q21.2  [Link to chromosome band 8q21]
Location_base_pair Starts at 86758389 and ends at 86788848 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PDE9A (21q22.3) / REXO1L1P (8q21.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)REXO1L1P   24660
Cards
Entrez_Gene (NCBI)REXO1L1P  254958  REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene
AliasesGOR; REXO1L1
GeneCards (Weizmann)REXO1L1P
Ensembl hg19 (Hinxton)ENSG00000205176 [Gene_View]  chr8:86758389-86788848 [Contig_View]  REXO1L1P [Vega]
Ensembl hg38 (Hinxton)ENSG00000205176 [Gene_View]  chr8:86758389-86788848 [Contig_View]  REXO1L1P [Vega]
ICGC DataPortalENSG00000205176
TCGA cBioPortalREXO1L1P
AceView (NCBI)REXO1L1P
Genatlas (Paris)REXO1L1P
WikiGenes254958
SOURCE (Princeton)REXO1L1P
Genetics Home Reference (NIH)REXO1L1P
Genomic and cartography
GoldenPath hg19 (UCSC)REXO1L1P  -     chr8:86758389-86788848 -  8q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)REXO1L1P  -     8q21.2   [Description]    (hg38-Dec_2013)
EnsemblREXO1L1P - 8q21.2 [CytoView hg19]  REXO1L1P - 8q21.2 [CytoView hg38]
Mapping of homologs : NCBIREXO1L1P [Mapview hg19]  REXO1L1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF495523 BC167782
RefSeq transcript (Entrez)NM_172239
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)REXO1L1P
Cluster EST : UnigeneHs.373854 [ NCBI ]
CGAP (NCI)Hs.373854
Alternative Splicing GalleryENSG00000205176
Gene ExpressionREXO1L1P [ NCBI-GEO ]   REXO1L1P [ EBI - ARRAY_EXPRESS ]   REXO1L1P [ SEEK ]   REXO1L1P [ MEM ]
Gene Expression Viewer (FireBrowse)REXO1L1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254958
GTEX Portal (Tissue expression)REXO1L1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX06
Splice isoforms : SwissVarQ8IX06
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ8IX06
Domains : Interpro (EBI)Exonuclease    Exonuclease_RNaseT/DNA_pol3    RNaseH-like_dom   
Domain families : Pfam (Sanger)RNase_T (PF00929)   
Domain families : Pfam (NCBI)pfam00929   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)REXO1L1P
DMDM Disease mutations254958
Blocks (Seattle)REXO1L1P
SuperfamilyQ8IX06
Human Protein AtlasENSG00000205176
Peptide AtlasQ8IX06
HPRD17049
IPIIPI00892939   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX06
IntAct (EBI)Q8IX06
FunCoupENSG00000205176
BioGRIDREXO1L1P
STRING (EMBL)REXO1L1P
ZODIACREXO1L1P
Ontologies - Pathways
QuickGOQ8IX06
Ontology : AmiGOnucleic acid binding  exonuclease activity  protein binding  nucleus  cytoplasm  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleic acid binding  exonuclease activity  protein binding  nucleus  cytoplasm  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkREXO1L1P
Atlas of Cancer Signalling NetworkREXO1L1P
Wikipedia pathwaysREXO1L1P
Orthology - Evolution
OrthoDB254958
GeneTree (enSembl)ENSG00000205176
Phylogenetic Trees/Animal Genes : TreeFamREXO1L1P
HOVERGENQ8IX06
HOGENOMQ8IX06
Homologs : HomoloGeneREXO1L1P
Homology/Alignments : Family Browser (UCSC)REXO1L1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREXO1L1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REXO1L1P
dbVarREXO1L1P
ClinVarREXO1L1P
1000_GenomesREXO1L1P 
Exome Variant ServerREXO1L1P
ExAC (Exome Aggregation Consortium)REXO1L1P (select the gene name)
Genetic variants : HAPMAP254958
Genomic Variants (DGV)REXO1L1P [DGVbeta]
DECIPHER (Syndromes)8:86758389-86788848  ENSG00000205176
CONAN: Copy Number AnalysisREXO1L1P 
Mutations
ICGC Data PortalREXO1L1P 
TCGA Data PortalREXO1L1P 
Broad Tumor PortalREXO1L1P
OASIS PortalREXO1L1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDREXO1L1P
BioMutasearch REXO1L1P
DgiDB (Drug Gene Interaction Database)REXO1L1P
DoCM (Curated mutations)REXO1L1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REXO1L1P (select a term)
intoGenREXO1L1P
Cancer3DREXO1L1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenREXO1L1P
Genetic Testing Registry REXO1L1P
NextProtQ8IX06 [Medical]
TSGene254958
GENETestsREXO1L1P
Huge Navigator REXO1L1P [HugePedia]
snp3D : Map Gene to Disease254958
BioCentury BCIQREXO1L1P
ClinGenREXO1L1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254958
Chemical/Pharm GKB GenePA142671078
Clinical trialREXO1L1P
Miscellaneous
canSAR (ICR)REXO1L1P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREXO1L1P
EVEXREXO1L1P
GoPubMedREXO1L1P
iHOPREXO1L1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:54 CET 2017

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