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REXO5 (RNA exonuclease 5)

Identity

Alias_symbol (synonym)NEF-sp
Other alias
HGNC (Hugo) REXO5
LocusID (NCBI) 81691
Atlas_Id 79350
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20806445 and ends at 20849668 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)REXO5   24661
Cards
Entrez_Gene (NCBI)REXO5  81691  RNA exonuclease 5
AliasesNEF-sp
GeneCards (Weizmann)REXO5
Ensembl hg19 (Hinxton)ENSG00000005189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005189 [Gene_View]  chr16:20806445-20849668 [Contig_View]  REXO5 [Vega]
ICGC DataPortalENSG00000005189
TCGA cBioPortalREXO5
AceView (NCBI)REXO5
Genatlas (Paris)REXO5
WikiGenes81691
SOURCE (Princeton)REXO5
Genetics Home Reference (NIH)REXO5
Genomic and cartography
GoldenPath hg38 (UCSC)REXO5  -     chr16:20806445-20849668 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)REXO5  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblREXO5 - 16p12.3 [CytoView hg19]  REXO5 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIREXO5 [Mapview hg19]  REXO5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF332193 AK314458 AL136763 AL162035 AM392845
RefSeq transcript (Entrez)NM_001144924 NM_001199053 NM_030941
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)REXO5
Cluster EST : UnigeneHs.177926 [ NCBI ]
CGAP (NCI)Hs.177926
Alternative Splicing GalleryENSG00000005189
Gene ExpressionREXO5 [ NCBI-GEO ]   REXO5 [ EBI - ARRAY_EXPRESS ]   REXO5 [ SEEK ]   REXO5 [ MEM ]
Gene Expression Viewer (FireBrowse)REXO5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81691
GTEX Portal (Tissue expression)REXO5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IC2
Splice isoforms : SwissVarQ96IC2
PhosPhoSitePlusQ96IC2
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Exonuclease_RNaseT/DNA_pol3    Nucleotide-bd_a/b_plait    RNaseH-like_dom    RRM_dom   
Domain families : Pfam (Sanger)RNase_T (PF00929)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00929    pfam00076   
Domain families : Smart (EMBL)EXOIII (SM00479)  RRM (SM00360)  
Conserved Domain (NCBI)REXO5
DMDM Disease mutations81691
Blocks (Seattle)REXO5
SuperfamilyQ96IC2
Human Protein AtlasENSG00000005189
Peptide AtlasQ96IC2
IPIIPI00307029   IPI00021754   
Protein Interaction databases
DIP (DOE-UCLA)Q96IC2
IntAct (EBI)Q96IC2
FunCoupENSG00000005189
BioGRIDREXO5
STRING (EMBL)REXO5
ZODIACREXO5
Ontologies - Pathways
QuickGOQ96IC2
Ontology : AmiGORNA binding  exonuclease activity  nucleolus  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIRNA binding  exonuclease activity  nucleolus  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkREXO5
Atlas of Cancer Signalling NetworkREXO5
Wikipedia pathwaysREXO5
Orthology - Evolution
OrthoDB81691
GeneTree (enSembl)ENSG00000005189
Phylogenetic Trees/Animal Genes : TreeFamREXO5
HOVERGENQ96IC2
HOGENOMQ96IC2
Homologs : HomoloGeneREXO5
Homology/Alignments : Family Browser (UCSC)REXO5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerREXO5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)REXO5
dbVarREXO5
ClinVarREXO5
1000_GenomesREXO5 
Exome Variant ServerREXO5
ExAC (Exome Aggregation Consortium)REXO5 (select the gene name)
Genetic variants : HAPMAP81691
Genomic Variants (DGV)REXO5 [DGVbeta]
DECIPHERREXO5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisREXO5 
Mutations
ICGC Data PortalREXO5 
TCGA Data PortalREXO5 
Broad Tumor PortalREXO5
OASIS PortalREXO5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDREXO5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch REXO5
DgiDB (Drug Gene Interaction Database)REXO5
DoCM (Curated mutations)REXO5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)REXO5 (select a term)
intoGenREXO5
Cancer3DREXO5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenREXO5
Genetic Testing Registry REXO5
NextProtQ96IC2 [Medical]
TSGene81691
GENETestsREXO5
Target ValidationREXO5
Huge Navigator REXO5 [HugePedia]
snp3D : Map Gene to Disease81691
BioCentury BCIQREXO5
ClinGenREXO5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81691
Clinical trialREXO5
Miscellaneous
canSAR (ICR)REXO5 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineREXO5
EVEXREXO5
GoPubMedREXO5
iHOPREXO5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:36:05 CEST 2017

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