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RFC3 (replication factor C subunit 3)

Identity

Other namesRFC38
HGNC (Hugo) RFC3
LocusID (NCBI) 5983
Atlas_Id 42089
Location 13q13.2  [Link to chromosome band 13q13]
Location_base_pair Starts at 34392206 and ends at 34411644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FOXP2 (7q31.1) / RFC3 (13q13.2)PAN3 (13q12.2) / RFC3 (13q13.2)RASSF4 (10q11.21) / RFC3 (13q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFC3   9971
Cards
Entrez_Gene (NCBI)RFC3  5983  replication factor C subunit 3
AliasesRFC38
GeneCards (Weizmann)RFC3
Ensembl hg19 (Hinxton)ENSG00000133119 [Gene_View]  chr13:34392206-34411644 [Contig_View]  RFC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133119 [Gene_View]  chr13:34392206-34411644 [Contig_View]  RFC3 [Vega]
ICGC DataPortalENSG00000133119
TCGA cBioPortalRFC3
AceView (NCBI)RFC3
Genatlas (Paris)RFC3
WikiGenes5983
SOURCE (Princeton)RFC3
Genomic and cartography
GoldenPath hg19 (UCSC)RFC3  -     chr13:34392206-34411644 +  13q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFC3  -     13q13.2   [Description]    (hg38-Dec_2013)
EnsemblRFC3 - 13q13.2 [CytoView hg19]  RFC3 - 13q13.2 [CytoView hg38]
Mapping of homologs : NCBIRFC3 [Mapview hg19]  RFC3 [Mapview hg38]
OMIM600405   
Gene and transcription
Genbank (Entrez)AA447424 AI221523 AK128459 AK222572 AK296527
RefSeq transcript (Entrez)NM_002915 NM_181558
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)RFC3
Cluster EST : UnigeneHs.661994 [ NCBI ]
CGAP (NCI)Hs.661994
Alternative Splicing GalleryENSG00000133119
Gene ExpressionRFC3 [ NCBI-GEO ]   RFC3 [ EBI - ARRAY_EXPRESS ]   RFC3 [ SEEK ]   RFC3 [ MEM ]
Gene Expression Viewer (FireBrowse)RFC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5983
GTEX Portal (Tissue expression)RFC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40938 (Uniprot)
NextProtP40938  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40938
Splice isoforms : SwissVarP40938 (Swissvar)
PhosPhoSitePlusP40938
Domains : Interpro (EBI)AAA+_ATPase    DNA_pol3_clamp-load_cplx_C    P-loop_NTPase    Rep_factorC_C   
Domain families : Pfam (Sanger)Rep_fac_C (PF08542)   
Domain families : Pfam (NCBI)pfam08542   
Domain families : Smart (EMBL)AAA (SM00382)  
DMDM Disease mutations5983
Blocks (Seattle)RFC3
SuperfamilyP40938
Human Protein AtlasENSG00000133119
Peptide AtlasP40938
HPRD02676
IPIIPI00031521   IPI00373882   
Protein Interaction databases
DIP (DOE-UCLA)P40938
IntAct (EBI)P40938
FunCoupENSG00000133119
BioGRIDRFC3
STRING (EMBL)RFC3
ZODIACRFC3
Ontologies - Pathways
QuickGOP40938
Ontology : AmiGOtelomere maintenance via recombination  DNA synthesis involved in DNA repair  DNA binding  DNA clamp loader activity  DNA clamp loader activity  protein binding  nucleoplasm  DNA replication factor C complex  DNA replication factor C complex  DNA replication  DNA replication  DNA strand elongation involved in DNA replication  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, DNA incision, 5'-to lesion  nucleotide-excision repair, DNA gap filling  ATPase activity  translesion synthesis  Ctf18 RFC-like complex  nucleotide-excision repair, DNA incision  error-prone translesion synthesis  DNA damage response, detection of DNA damage  single-stranded DNA-dependent ATPase activity  response to organophosphorus  error-free translesion synthesis  positive regulation of DNA-directed DNA polymerase activity  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBItelomere maintenance via recombination  DNA synthesis involved in DNA repair  DNA binding  DNA clamp loader activity  DNA clamp loader activity  protein binding  nucleoplasm  DNA replication factor C complex  DNA replication factor C complex  DNA replication  DNA replication  DNA strand elongation involved in DNA replication  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, DNA incision, 5'-to lesion  nucleotide-excision repair, DNA gap filling  ATPase activity  translesion synthesis  Ctf18 RFC-like complex  nucleotide-excision repair, DNA incision  error-prone translesion synthesis  DNA damage response, detection of DNA damage  single-stranded DNA-dependent ATPase activity  response to organophosphorus  error-free translesion synthesis  positive regulation of DNA-directed DNA polymerase activity  regulation of signal transduction by p53 class mediator  
Pathways : KEGGDNA replication    Nucleotide excision repair    Mismatch repair   
NDEx Network
Atlas of Cancer Signalling NetworkRFC3
Wikipedia pathwaysRFC3
Orthology - Evolution
OrthoDB5983
GeneTree (enSembl)ENSG00000133119
Phylogenetic Trees/Animal Genes : TreeFamRFC3
Homologs : HomoloGeneRFC3
Homology/Alignments : Family Browser (UCSC)RFC3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRFC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFC3
dbVarRFC3
ClinVarRFC3
1000_GenomesRFC3 
Exome Variant ServerRFC3
ExAC (Exome Aggregation Consortium)RFC3 (select the gene name)
Genetic variants : HAPMAP5983
Genomic Variants (DGV)RFC3 [DGVbeta]
Mutations
ICGC Data PortalRFC3 
TCGA Data PortalRFC3 
Broad Tumor PortalRFC3
OASIS PortalRFC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFC3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFC3
DgiDB (Drug Gene Interaction Database)RFC3
DoCM (Curated mutations)RFC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFC3 (select a term)
intoGenRFC3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:34392206-34411644  ENSG00000133119
CONAN: Copy Number AnalysisRFC3 
Mutations and Diseases : HGMDRFC3
OMIM600405   
MedgenRFC3
Genetic Testing Registry RFC3
NextProtP40938 [Medical]
TSGene5983
GENETestsRFC3
Huge Navigator RFC3 [HugePedia]
snp3D : Map Gene to Disease5983
BioCentury BCIQRFC3
ClinGenRFC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5983
Chemical/Pharm GKB GenePA34340
Clinical trialRFC3
Miscellaneous
canSAR (ICR)RFC3 (select the gene name)
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFC3
EVEXRFC3
GoPubMedRFC3
iHOPRFC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:08:27 CEST 2016

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