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RFC3 (replication factor C (activator 1) 3, 38kDa)

Identity

Other namesRFC38
HGNC (Hugo) RFC3
LocusID (NCBI) 5983
Location 13q13.2
Location_base_pair Starts at 34392206 and ends at 34411644 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RFC3   9971
Cards
Entrez_Gene (NCBI)RFC3  5983  replication factor C (activator 1) 3, 38kDa
GeneCards (Weizmann)RFC3
Ensembl (Hinxton)ENSG00000133119 [Gene_View]  chr13:34392206-34411644 [Contig_View]  RFC3 [Vega]
ICGC DataPortalENSG00000133119
cBioPortalRFC3
AceView (NCBI)RFC3
Genatlas (Paris)RFC3
WikiGenes5983
SOURCE (Princeton)NM_002915 NM_181558
Genomic and cartography
GoldenPath (UCSC)RFC3  -  13q13.2   chr13:34392206-34411644 +  13q13.2   [Description]    (hg19-Feb_2009)
EnsemblRFC3 - 13q13.2 [CytoView]
Mapping of homologs : NCBIRFC3 [Mapview]
OMIM600405   
Gene and transcription
Genbank (Entrez)AA447424 AI221523 AK128459 AK222572 AK296527
RefSeq transcript (Entrez)NM_002915 NM_181558
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838072 NW_004929388
Consensus coding sequences : CCDS (NCBI)RFC3
Cluster EST : UnigeneHs.115474 [ NCBI ]
CGAP (NCI)Hs.115474
Alternative Splicing : Fast-db (Paris)GSHG0008040
Alternative Splicing GalleryENSG00000133119
Gene ExpressionRFC3 [ NCBI-GEO ]     RFC3 [ SEEK ]   RFC3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40938 (Uniprot)
NextProtP40938  [Medical]
With graphics : InterProP40938
Splice isoforms : SwissVarP40938 (Swissvar)
Domains : Interpro (EBI)AAA+_ATPase [organisation]   DNA_pol3_clamp-load_cplx_C [organisation]   P-loop_NTPase [organisation]   Rep_factorC_C_dom [organisation]  
Related proteins : CluSTrP40938
Domain families : Pfam (Sanger)Rep_fac_C (PF08542)   
Domain families : Pfam (NCBI)pfam08542   
Domain families : Smart (EMBL)AAA (SM00382)  
DMDM Disease mutations5983
Blocks (Seattle)P40938
Human Protein AtlasENSG00000133119 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP40938
HPRD02676
IPIIPI00031521   IPI00373882   
Protein Interaction databases
DIP (DOE-UCLA)P40938
IntAct (EBI)P40938
FunCoupENSG00000133119
BioGRIDRFC3
InParanoidP40938
Interologous Interaction database P40938
IntegromeDBRFC3
STRING (EMBL)RFC3
Ontologies - Pathways
Ontology : AmiGOnucleotide binding  mitotic cell cycle  telomere maintenance via recombination  telomere maintenance  DNA synthesis involved in DNA repair  DNA binding  DNA clamp loader activity  protein binding  nucleoplasm  DNA replication factor C complex  DNA replication factor C complex  ATP catabolic process  DNA replication  DNA replication  DNA strand elongation involved in DNA replication  DNA repair  transcription-coupled nucleotide-excision repair  nucleotide-excision repair  nucleotide-excision repair, DNA gap filling  ATPase activity  telomere maintenance via semi-conservative replication  response to organophosphorus  
Ontology : EGO-EBInucleotide binding  mitotic cell cycle  telomere maintenance via recombination  telomere maintenance  DNA synthesis involved in DNA repair  DNA binding  DNA clamp loader activity  protein binding  nucleoplasm  DNA replication factor C complex  DNA replication factor C complex  ATP catabolic process  DNA replication  DNA replication  DNA strand elongation involved in DNA replication  DNA repair  transcription-coupled nucleotide-excision repair  nucleotide-excision repair  nucleotide-excision repair, DNA gap filling  ATPase activity  telomere maintenance via semi-conservative replication  response to organophosphorus  
Pathways : KEGGDNA replication    Nucleotide excision repair    Mismatch repair   
Protein Interaction DatabaseRFC3
Wikipedia pathwaysRFC3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RFC3
snp3D : Map Gene to Disease5983
SNP (GeneSNP Utah)RFC3
SNP : HGBaseRFC3
Genetic variants : HAPMAPRFC3
Exome VariantRFC3
1000_GenomesRFC3 
ICGC programENSG00000133119 
Somatic Mutations in Cancer : COSMICRFC3 
CONAN: Copy Number AnalysisRFC3 
Mutations and Diseases : HGMDRFC3
Mutations and Diseases : intOGenRFC3
Genomic VariantsRFC3  RFC3 [DGVbeta]
dbVarRFC3
ClinVarRFC3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600405   
MedgenRFC3
GENETestsRFC3
Disease Genetic AssociationRFC3
Huge Navigator RFC3 [HugePedia]  RFC3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRFC3
Homology/Alignments : Family Browser (UCSC)RFC3
Phylogenetic Trees/Animal Genes : TreeFamRFC3
Chemical/Protein Interactions : CTD5983
Chemical/Pharm GKB GenePA34340
Clinical trialRFC3
Cancer Resource (Charite)ENSG00000133119
Other databases
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
CoreMineRFC3
iHOPRFC3
OncoSearchRFC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:02:47 CEST 2014

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