Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RFESD (Rieske (Fe-S) domain containing)

Identity

Alias_namesRieske (Fe-S) domain containing
Other alias-
HGNC (Hugo) RFESD
LocusID (NCBI) 317671
Atlas_Id 72588
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 94982583 and ends at 94992849 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFESD   29587
Cards
Entrez_Gene (NCBI)RFESD  317671  Rieske (Fe-S) domain containing
Aliases
GeneCards (Weizmann)RFESD
Ensembl hg19 (Hinxton)ENSG00000175449 [Gene_View]  chr5:94982583-94992849 [Contig_View]  RFESD [Vega]
Ensembl hg38 (Hinxton)ENSG00000175449 [Gene_View]  chr5:94982583-94992849 [Contig_View]  RFESD [Vega]
ICGC DataPortalENSG00000175449
TCGA cBioPortalRFESD
AceView (NCBI)RFESD
Genatlas (Paris)RFESD
WikiGenes317671
SOURCE (Princeton)RFESD
Genetics Home Reference (NIH)RFESD
Genomic and cartography
GoldenPath hg19 (UCSC)RFESD  -     chr5:94982583-94992849 +  5q15   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFESD  -     5q15   [Description]    (hg38-Dec_2013)
EnsemblRFESD - 5q15 [CytoView hg19]  RFESD - 5q15 [CytoView hg38]
Mapping of homologs : NCBIRFESD [Mapview hg19]  RFESD [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC024023 BC035110 BC048979 BI551847 BM263054
RefSeq transcript (Entrez)NM_001131065 NM_001131066 NM_173362
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)RFESD
Cluster EST : UnigeneHs.399758 [ NCBI ]
CGAP (NCI)Hs.399758
Alternative Splicing GalleryENSG00000175449
Gene ExpressionRFESD [ NCBI-GEO ]   RFESD [ EBI - ARRAY_EXPRESS ]   RFESD [ SEEK ]   RFESD [ MEM ]
Gene Expression Viewer (FireBrowse)RFESD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317671
GTEX Portal (Tissue expression)RFESD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAC1
Splice isoforms : SwissVarQ8TAC1
PhosPhoSitePlusQ8TAC1
Domaine pattern : Prosite (Expaxy)RIESKE (PS51296)   
Domains : Interpro (EBI)Rieske_2Fe-2S   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RFESD
DMDM Disease mutations317671
Blocks (Seattle)RFESD
SuperfamilyQ8TAC1
Human Protein AtlasENSG00000175449
Peptide AtlasQ8TAC1
HPRD14164
IPIIPI00152031   IPI00657935   IPI00967593   IPI00965213   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAC1
IntAct (EBI)Q8TAC1
FunCoupENSG00000175449
BioGRIDRFESD
STRING (EMBL)RFESD
ZODIACRFESD
Ontologies - Pathways
QuickGOQ8TAC1
Ontology : AmiGOprotein binding  oxidoreductase activity  metal ion binding  2 iron, 2 sulfur cluster binding  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  oxidoreductase activity  metal ion binding  2 iron, 2 sulfur cluster binding  oxidation-reduction process  
NDEx NetworkRFESD
Atlas of Cancer Signalling NetworkRFESD
Wikipedia pathwaysRFESD
Orthology - Evolution
OrthoDB317671
GeneTree (enSembl)ENSG00000175449
Phylogenetic Trees/Animal Genes : TreeFamRFESD
HOVERGENQ8TAC1
HOGENOMQ8TAC1
Homologs : HomoloGeneRFESD
Homology/Alignments : Family Browser (UCSC)RFESD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFESD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFESD
dbVarRFESD
ClinVarRFESD
1000_GenomesRFESD 
Exome Variant ServerRFESD
ExAC (Exome Aggregation Consortium)RFESD (select the gene name)
Genetic variants : HAPMAP317671
Genomic Variants (DGV)RFESD [DGVbeta]
DECIPHER (Syndromes)5:94982583-94992849  ENSG00000175449
CONAN: Copy Number AnalysisRFESD 
Mutations
ICGC Data PortalRFESD 
TCGA Data PortalRFESD 
Broad Tumor PortalRFESD
OASIS PortalRFESD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFESD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFESD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFESD
DgiDB (Drug Gene Interaction Database)RFESD
DoCM (Curated mutations)RFESD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFESD (select a term)
intoGenRFESD
Cancer3DRFESD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRFESD
Genetic Testing Registry RFESD
NextProtQ8TAC1 [Medical]
TSGene317671
GENETestsRFESD
Huge Navigator RFESD [HugePedia]
snp3D : Map Gene to Disease317671
BioCentury BCIQRFESD
ClinGenRFESD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317671
Chemical/Pharm GKB GenePA162401171
Clinical trialRFESD
Miscellaneous
canSAR (ICR)RFESD (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFESD
EVEXRFESD
GoPubMedRFESD
iHOPRFESD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.