Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RFLNB (refilin B)

Identity

Other aliasCFM1
FAM101B
HGNC (Hugo) RFLNB
LocusID (NCBI) 359845
Atlas_Id 78614
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 439980 and ends at 445940 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFLNB   28705
Cards
Entrez_Gene (NCBI)RFLNB  359845  refilin B
AliasesCFM1; FAM101B
GeneCards (Weizmann)RFLNB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:439980-445940 [Contig_View]  RFLNB [Vega]
TCGA cBioPortalRFLNB
AceView (NCBI)RFLNB
Genatlas (Paris)RFLNB
WikiGenes359845
SOURCE (Princeton)RFLNB
Genetics Home Reference (NIH)RFLNB
Genomic and cartography
GoldenPath hg38 (UCSC)RFLNB  -     chr17:439980-445940 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFLNB  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblRFLNB - 17p13.3 [CytoView hg19]  RFLNB - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIRFLNB [Mapview hg19]  RFLNB [Mapview hg38]
OMIM615928   
Gene and transcription
Genbank (Entrez)AF085987 AK093557 BC014203 BC031341
RefSeq transcript (Entrez)NM_182705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFLNB
Cluster EST : UnigeneHs.741149 [ NCBI ]
CGAP (NCI)Hs.741149
Gene ExpressionRFLNB [ NCBI-GEO ]   RFLNB [ EBI - ARRAY_EXPRESS ]   RFLNB [ SEEK ]   RFLNB [ MEM ]
Gene Expression Viewer (FireBrowse)RFLNB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)359845
GTEX Portal (Tissue expression)RFLNB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5W9
Splice isoforms : SwissVarQ8N5W9
PhosPhoSitePlusQ8N5W9
Domains : Interpro (EBI)FAM101   
Domain families : Pfam (Sanger)FAM101 (PF15068)   
Domain families : Pfam (NCBI)pfam15068   
Conserved Domain (NCBI)RFLNB
DMDM Disease mutations359845
Blocks (Seattle)RFLNB
SuperfamilyQ8N5W9
Peptide AtlasQ8N5W9
HPRD14646
IPIIPI00166945   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5W9
IntAct (EBI)Q8N5W9
BioGRIDRFLNB
STRING (EMBL)RFLNB
ZODIACRFLNB
Ontologies - Pathways
QuickGOQ8N5W9
Ontology : AmiGOepithelial to mesenchymal transition  cytoplasm  filamin binding  actin filament bundle  skeletal system morphogenesis  negative regulation of chondrocyte development  actin filament bundle organization  negative regulation of bone mineralization involved in bone maturation  
Ontology : EGO-EBIepithelial to mesenchymal transition  cytoplasm  filamin binding  actin filament bundle  skeletal system morphogenesis  negative regulation of chondrocyte development  actin filament bundle organization  negative regulation of bone mineralization involved in bone maturation  
NDEx NetworkRFLNB
Atlas of Cancer Signalling NetworkRFLNB
Wikipedia pathwaysRFLNB
Orthology - Evolution
OrthoDB359845
Phylogenetic Trees/Animal Genes : TreeFamRFLNB
HOVERGENQ8N5W9
HOGENOMQ8N5W9
Homologs : HomoloGeneRFLNB
Homology/Alignments : Family Browser (UCSC)RFLNB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFLNB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFLNB
dbVarRFLNB
ClinVarRFLNB
1000_GenomesRFLNB 
Exome Variant ServerRFLNB
ExAC (Exome Aggregation Consortium)RFLNB (select the gene name)
Genetic variants : HAPMAP359845
Genomic Variants (DGV)RFLNB [DGVbeta]
DECIPHERRFLNB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFLNB 
Mutations
ICGC Data PortalRFLNB 
TCGA Data PortalRFLNB 
Broad Tumor PortalRFLNB
OASIS PortalRFLNB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRFLNB
BioMutasearch RFLNB
DgiDB (Drug Gene Interaction Database)RFLNB
DoCM (Curated mutations)RFLNB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFLNB (select a term)
intoGenRFLNB
Cancer3DRFLNB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615928   
Orphanet
MedgenRFLNB
Genetic Testing Registry RFLNB
NextProtQ8N5W9 [Medical]
TSGene359845
GENETestsRFLNB
Target ValidationRFLNB
Huge Navigator RFLNB [HugePedia]
snp3D : Map Gene to Disease359845
BioCentury BCIQRFLNB
ClinGenRFLNB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD359845
Chemical/Pharm GKB GenePA143485463
Clinical trialRFLNB
Miscellaneous
canSAR (ICR)RFLNB (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFLNB
EVEXRFLNB
GoPubMedRFLNB
iHOPRFLNB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:38:31 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.