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RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase)

Identity

Alias_namesradical fringe (Drosophila) homolog
radical fringe homolog (Drosophila)
Other alias-
HGNC (Hugo) RFNG
LocusID (NCBI) 5986
Atlas_Id 72589
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82047902 and ends at 82051774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RFNG (17q25.3) / TALDO1 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFNG   9974
Cards
Entrez_Gene (NCBI)RFNG  5986  RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Aliases
GeneCards (Weizmann)RFNG
Ensembl hg19 (Hinxton)ENSG00000169733 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169733 [Gene_View]  chr17:82047902-82051774 [Contig_View]  RFNG [Vega]
ICGC DataPortalENSG00000169733
TCGA cBioPortalRFNG
AceView (NCBI)RFNG
Genatlas (Paris)RFNG
WikiGenes5986
SOURCE (Princeton)RFNG
Genetics Home Reference (NIH)RFNG
Genomic and cartography
GoldenPath hg38 (UCSC)RFNG  -     chr17:82047902-82051774 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFNG  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblRFNG - 17q25.3 [CytoView hg19]  RFNG - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIRFNG [Mapview hg19]  RFNG [Mapview hg38]
OMIM602578   
Gene and transcription
Genbank (Entrez)AF038196 AK094016 AK293568 AK302068 BC014495
RefSeq transcript (Entrez)NM_002917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFNG
Cluster EST : UnigeneHs.569700 [ NCBI ]
CGAP (NCI)Hs.569700
Alternative Splicing GalleryENSG00000169733
Gene ExpressionRFNG [ NCBI-GEO ]   RFNG [ EBI - ARRAY_EXPRESS ]   RFNG [ SEEK ]   RFNG [ MEM ]
Gene Expression Viewer (FireBrowse)RFNG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5986
GTEX Portal (Tissue expression)RFNG
Human Protein AtlasENSG00000169733-RFNG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y644   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y644  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y644
Splice isoforms : SwissVarQ9Y644
Catalytic activity : Enzyme2.4.1.222 [ Enzyme-Expasy ]   2.4.1.2222.4.1.222 [ IntEnz-EBI ]   2.4.1.222 [ BRENDA ]   2.4.1.222 [ KEGG ]   
PhosPhoSitePlusQ9Y644
Domains : Interpro (EBI)Fringe    Fringe-like   
Domain families : Pfam (Sanger)Fringe (PF02434)   
Domain families : Pfam (NCBI)pfam02434   
Conserved Domain (NCBI)RFNG
DMDM Disease mutations5986
Blocks (Seattle)RFNG
SuperfamilyQ9Y644
Human Protein Atlas [tissue]ENSG00000169733-RFNG [tissue]
Peptide AtlasQ9Y644
HPRD09093
IPIIPI00001793   IPI01012125   IPI00645845   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y644
IntAct (EBI)Q9Y644
FunCoupENSG00000169733
BioGRIDRFNG
STRING (EMBL)RFNG
ZODIACRFNG
Ontologies - Pathways
QuickGOQ9Y644
Ontology : AmiGOmolecular_function  extracellular region  pattern specification process  nervous system development  animal organ morphogenesis  cell differentiation  integral component of Golgi membrane  positive regulation of protein binding  O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity  positive regulation of Notch signaling pathway  metal ion binding  extracellular exosome  
Ontology : EGO-EBImolecular_function  extracellular region  pattern specification process  nervous system development  animal organ morphogenesis  cell differentiation  integral component of Golgi membrane  positive regulation of protein binding  O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity  positive regulation of Notch signaling pathway  metal ion binding  extracellular exosome  
Pathways : KEGGOther types of O-glycan biosynthesis    Notch signaling pathway   
NDEx NetworkRFNG
Atlas of Cancer Signalling NetworkRFNG
Wikipedia pathwaysRFNG
Orthology - Evolution
OrthoDB5986
GeneTree (enSembl)ENSG00000169733
Phylogenetic Trees/Animal Genes : TreeFamRFNG
HOVERGENQ9Y644
HOGENOMQ9Y644
Homologs : HomoloGeneRFNG
Homology/Alignments : Family Browser (UCSC)RFNG
Gene fusions - Rearrangements
Tumor Fusion PortalRFNG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFNG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFNG
dbVarRFNG
ClinVarRFNG
1000_GenomesRFNG 
Exome Variant ServerRFNG
ExAC (Exome Aggregation Consortium)ENSG00000169733
GNOMAD BrowserENSG00000169733
Genetic variants : HAPMAP5986
Genomic Variants (DGV)RFNG [DGVbeta]
DECIPHERRFNG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFNG 
Mutations
ICGC Data PortalRFNG 
TCGA Data PortalRFNG 
Broad Tumor PortalRFNG
OASIS PortalRFNG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFNG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFNG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFNG
DgiDB (Drug Gene Interaction Database)RFNG
DoCM (Curated mutations)RFNG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFNG (select a term)
intoGenRFNG
Cancer3DRFNG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602578   
Orphanet
DisGeNETRFNG
MedgenRFNG
Genetic Testing Registry RFNG
NextProtQ9Y644 [Medical]
TSGene5986
GENETestsRFNG
Target ValidationRFNG
Huge Navigator RFNG [HugePedia]
snp3D : Map Gene to Disease5986
BioCentury BCIQRFNG
ClinGenRFNG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5986
Chemical/Pharm GKB GenePA34343
Clinical trialRFNG
Miscellaneous
canSAR (ICR)RFNG (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFNG
EVEXRFNG
GoPubMedRFNG
iHOPRFNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:36:38 CET 2017

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