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RFPL1 (ret finger protein like 1)

Identity

Alias_symbol (synonym)RNF78
Other alias
HGNC (Hugo) RFPL1
LocusID (NCBI) 5988
Atlas_Id 72590
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 29438583 and ends at 29442455 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL1   9977
Cards
Entrez_Gene (NCBI)RFPL1  5988  ret finger protein like 1
AliasesRNF78
GeneCards (Weizmann)RFPL1
Ensembl hg19 (Hinxton)ENSG00000128250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128250 [Gene_View]  chr22:29438583-29442455 [Contig_View]  RFPL1 [Vega]
ICGC DataPortalENSG00000128250
TCGA cBioPortalRFPL1
AceView (NCBI)RFPL1
Genatlas (Paris)RFPL1
WikiGenes5988
SOURCE (Princeton)RFPL1
Genetics Home Reference (NIH)RFPL1
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL1  -     chr22:29438583-29442455 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL1  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblRFPL1 - 22q12.2 [CytoView hg19]  RFPL1 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIRFPL1 [Mapview hg19]  RFPL1 [Mapview hg38]
OMIM605968   
Gene and transcription
Genbank (Entrez)AJ010228 AJ010229 BC104768 CR456562 CU013161
RefSeq transcript (Entrez)NM_021026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL1
Cluster EST : UnigeneHs.648249 [ NCBI ]
CGAP (NCI)Hs.648249
Alternative Splicing GalleryENSG00000128250
Gene ExpressionRFPL1 [ NCBI-GEO ]   RFPL1 [ EBI - ARRAY_EXPRESS ]   RFPL1 [ SEEK ]   RFPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5988
GTEX Portal (Tissue expression)RFPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75677   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75677  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75677
Splice isoforms : SwissVarO75677
PhosPhoSitePlusO75677
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    RDM_domain_RFPL    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    RDM (PF11002)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam11002    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL1
DMDM Disease mutations5988
Blocks (Seattle)RFPL1
SuperfamilyO75677
Human Protein AtlasENSG00000128250
Peptide AtlasO75677
HPRD16182
IPIIPI00465224   
Protein Interaction databases
DIP (DOE-UCLA)O75677
IntAct (EBI)O75677
FunCoupENSG00000128250
BioGRIDRFPL1
STRING (EMBL)RFPL1
ZODIACRFPL1
Ontologies - Pathways
QuickGOO75677
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRFPL1
Atlas of Cancer Signalling NetworkRFPL1
Wikipedia pathwaysRFPL1
Orthology - Evolution
OrthoDB5988
GeneTree (enSembl)ENSG00000128250
Phylogenetic Trees/Animal Genes : TreeFamRFPL1
HOVERGENO75677
HOGENOMO75677
Homologs : HomoloGeneRFPL1
Homology/Alignments : Family Browser (UCSC)RFPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL1
dbVarRFPL1
ClinVarRFPL1
1000_GenomesRFPL1 
Exome Variant ServerRFPL1
ExAC (Exome Aggregation Consortium)RFPL1 (select the gene name)
Genetic variants : HAPMAP5988
Genomic Variants (DGV)RFPL1 [DGVbeta]
DECIPHERRFPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL1 
Mutations
ICGC Data PortalRFPL1 
TCGA Data PortalRFPL1 
Broad Tumor PortalRFPL1
OASIS PortalRFPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFPL1
DgiDB (Drug Gene Interaction Database)RFPL1
DoCM (Curated mutations)RFPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL1 (select a term)
intoGenRFPL1
Cancer3DRFPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605968   
Orphanet
MedgenRFPL1
Genetic Testing Registry RFPL1
NextProtO75677 [Medical]
TSGene5988
GENETestsRFPL1
Huge Navigator RFPL1 [HugePedia]
snp3D : Map Gene to Disease5988
BioCentury BCIQRFPL1
ClinGenRFPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5988
Chemical/Pharm GKB GenePA34346
Clinical trialRFPL1
Miscellaneous
canSAR (ICR)RFPL1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL1
EVEXRFPL1
GoPubMedRFPL1
iHOPRFPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:49 CEST 2017

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