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RFPL2 (ret finger protein-like 2)

Identity

Alias_symbol (synonym)RNF79
Other alias
HGNC (Hugo) RFPL2
LocusID (NCBI) 10739
Atlas_Id 72592
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32586422 and ends at 32599464 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL2   9979
Cards
Entrez_Gene (NCBI)RFPL2  10739  ret finger protein-like 2
AliasesRNF79
GeneCards (Weizmann)RFPL2
Ensembl hg19 (Hinxton)ENSG00000128253 [Gene_View]  chr22:32586422-32599464 [Contig_View]  RFPL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128253 [Gene_View]  chr22:32586422-32599464 [Contig_View]  RFPL2 [Vega]
ICGC DataPortalENSG00000128253
TCGA cBioPortalRFPL2
AceView (NCBI)RFPL2
Genatlas (Paris)RFPL2
WikiGenes10739
SOURCE (Princeton)RFPL2
Genetics Home Reference (NIH)RFPL2
Genomic and cartography
GoldenPath hg19 (UCSC)RFPL2  -     chr22:32586422-32599464 -  22q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFPL2  -     22q12.3   [Description]    (hg38-Dec_2013)
EnsemblRFPL2 - 22q12.3 [CytoView hg19]  RFPL2 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIRFPL2 [Mapview hg19]  RFPL2 [Mapview hg38]
OMIM605969   
Gene and transcription
Genbank (Entrez)AJ010231 AK055999 BC051910 BC069737 BC069827
RefSeq transcript (Entrez)NM_001098527 NM_001159545 NM_001159546 NM_006605
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)RFPL2
Cluster EST : UnigeneHs.157427 [ NCBI ]
CGAP (NCI)Hs.157427
Alternative Splicing GalleryENSG00000128253
Gene ExpressionRFPL2 [ NCBI-GEO ]   RFPL2 [ EBI - ARRAY_EXPRESS ]   RFPL2 [ SEEK ]   RFPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10739
GTEX Portal (Tissue expression)RFPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75678   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75678  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75678
Splice isoforms : SwissVarO75678
PhosPhoSitePlusO75678
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    RDM_domain_RFPL    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    RDM (PF11002)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam11002    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL2
DMDM Disease mutations10739
Blocks (Seattle)RFPL2
SuperfamilyO75678
Human Protein AtlasENSG00000128253
Peptide AtlasO75678
HPRD09338
IPIIPI00607829   IPI00220659   IPI00929133   
Protein Interaction databases
DIP (DOE-UCLA)O75678
IntAct (EBI)O75678
FunCoupENSG00000128253
BioGRIDRFPL2
STRING (EMBL)RFPL2
ZODIACRFPL2
Ontologies - Pathways
QuickGOO75678
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRFPL2
Atlas of Cancer Signalling NetworkRFPL2
Wikipedia pathwaysRFPL2
Orthology - Evolution
OrthoDB10739
GeneTree (enSembl)ENSG00000128253
Phylogenetic Trees/Animal Genes : TreeFamRFPL2
HOVERGENO75678
HOGENOMO75678
Homologs : HomoloGeneRFPL2
Homology/Alignments : Family Browser (UCSC)RFPL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL2
dbVarRFPL2
ClinVarRFPL2
1000_GenomesRFPL2 
Exome Variant ServerRFPL2
ExAC (Exome Aggregation Consortium)RFPL2 (select the gene name)
Genetic variants : HAPMAP10739
Genomic Variants (DGV)RFPL2 [DGVbeta]
DECIPHER (Syndromes)22:32586422-32599464  ENSG00000128253
CONAN: Copy Number AnalysisRFPL2 
Mutations
ICGC Data PortalRFPL2 
TCGA Data PortalRFPL2 
Broad Tumor PortalRFPL2
OASIS PortalRFPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFPL2
DgiDB (Drug Gene Interaction Database)RFPL2
DoCM (Curated mutations)RFPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL2 (select a term)
intoGenRFPL2
Cancer3DRFPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605969   
Orphanet
MedgenRFPL2
Genetic Testing Registry RFPL2
NextProtO75678 [Medical]
TSGene10739
GENETestsRFPL2
Huge Navigator RFPL2 [HugePedia]
snp3D : Map Gene to Disease10739
BioCentury BCIQRFPL2
ClinGenRFPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10739
Chemical/Pharm GKB GenePA34348
Clinical trialRFPL2
Miscellaneous
canSAR (ICR)RFPL2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL2
EVEXRFPL2
GoPubMedRFPL2
iHOPRFPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:55 CET 2017

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