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RFPL3 (ret finger protein like 3)

Identity

Other alias-
HGNC (Hugo) RFPL3
LocusID (NCBI) 10738
Atlas_Id 55479
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32753854 and ends at 32757148 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL3   9980
Cards
Entrez_Gene (NCBI)RFPL3  10738  ret finger protein like 3
Aliases
GeneCards (Weizmann)RFPL3
Ensembl hg19 (Hinxton)ENSG00000128276 [Gene_View]  chr22:32753854-32757148 [Contig_View]  RFPL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128276 [Gene_View]  chr22:32753854-32757148 [Contig_View]  RFPL3 [Vega]
ICGC DataPortalENSG00000128276
TCGA cBioPortalRFPL3
AceView (NCBI)RFPL3
Genatlas (Paris)RFPL3
WikiGenes10738
SOURCE (Princeton)RFPL3
Genetics Home Reference (NIH)RFPL3
Genomic and cartography
GoldenPath hg19 (UCSC)RFPL3  -     chr22:32753854-32757148 +  22q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFPL3  -     22q12.3   [Description]    (hg38-Dec_2013)
EnsemblRFPL3 - 22q12.3 [CytoView hg19]  RFPL3 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIRFPL3 [Mapview hg19]  RFPL3 [Mapview hg38]
OMIM605970   
Gene and transcription
Genbank (Entrez)AJ010232 AK097738 BC031689 BC069753 CR456564
RefSeq transcript (Entrez)NM_001098535 NM_006604
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)RFPL3
Cluster EST : UnigeneHs.558455 [ NCBI ]
CGAP (NCI)Hs.558455
Alternative Splicing GalleryENSG00000128276
Gene ExpressionRFPL3 [ NCBI-GEO ]   RFPL3 [ EBI - ARRAY_EXPRESS ]   RFPL3 [ SEEK ]   RFPL3 [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10738
GTEX Portal (Tissue expression)RFPL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75679   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75679  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75679
Splice isoforms : SwissVarO75679
PhosPhoSitePlusO75679
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    RDM_domain_RFPL    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    RDM (PF11002)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam11002    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL3
DMDM Disease mutations10738
Blocks (Seattle)RFPL3
SuperfamilyO75679
Human Protein AtlasENSG00000128276
Peptide AtlasO75679
HPRD09339
IPIIPI00550132   IPI00748883   
Protein Interaction databases
DIP (DOE-UCLA)O75679
IntAct (EBI)O75679
FunCoupENSG00000128276
BioGRIDRFPL3
STRING (EMBL)RFPL3
ZODIACRFPL3
Ontologies - Pathways
QuickGOO75679
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkRFPL3
Atlas of Cancer Signalling NetworkRFPL3
Wikipedia pathwaysRFPL3
Orthology - Evolution
OrthoDB10738
GeneTree (enSembl)ENSG00000128276
Phylogenetic Trees/Animal Genes : TreeFamRFPL3
HOVERGENO75679
HOGENOMO75679
Homologs : HomoloGeneRFPL3
Homology/Alignments : Family Browser (UCSC)RFPL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL3
dbVarRFPL3
ClinVarRFPL3
1000_GenomesRFPL3 
Exome Variant ServerRFPL3
ExAC (Exome Aggregation Consortium)RFPL3 (select the gene name)
Genetic variants : HAPMAP10738
Genomic Variants (DGV)RFPL3 [DGVbeta]
DECIPHER (Syndromes)22:32753854-32757148  ENSG00000128276
CONAN: Copy Number AnalysisRFPL3 
Mutations
ICGC Data PortalRFPL3 
TCGA Data PortalRFPL3 
Broad Tumor PortalRFPL3
OASIS PortalRFPL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFPL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFPL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFPL3
DgiDB (Drug Gene Interaction Database)RFPL3
DoCM (Curated mutations)RFPL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL3 (select a term)
intoGenRFPL3
Cancer3DRFPL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605970   
Orphanet
MedgenRFPL3
Genetic Testing Registry RFPL3
NextProtO75679 [Medical]
TSGene10738
GENETestsRFPL3
Huge Navigator RFPL3 [HugePedia]
snp3D : Map Gene to Disease10738
BioCentury BCIQRFPL3
ClinGenRFPL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10738
Chemical/Pharm GKB GenePA34349
Clinical trialRFPL3
Miscellaneous
canSAR (ICR)RFPL3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL3
EVEXRFPL3
GoPubMedRFPL3
iHOPRFPL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:16 CEST 2017

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