Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RFPL3S (RFPL3 antisense)

Identity

Alias_namesRFPL3-AS1
RFPL3 antisense RNA 1
Alias_symbol (synonym)RFPL3-AS
NCRNA00005
Other aliasRFPL3ANT
RFPL3AS
HGNC (Hugo) RFPL3S
LocusID (NCBI) 10737
Atlas_Id 72594
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32359906 and ends at 32371076 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF721 (4p16.3) / RFPL3S (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(4;22)(p16;q12) ZNF721/RFPL3S

External links

Nomenclature
HGNC (Hugo)RFPL3S   9981
Cards
Entrez_Gene (NCBI)RFPL3S  10737  RFPL3 antisense
AliasesNCRNA00005; RFPL3-AS; RFPL3-AS1; RFPL3ANT; 
RFPL3AS
GeneCards (Weizmann)RFPL3S
Ensembl hg19 (Hinxton)ENSG00000205853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205853 [Gene_View]  ENSG00000205853 [Sequence]  chr22:32359906-32371076 [Contig_View]  RFPL3S [Vega]
ICGC DataPortalENSG00000205853
TCGA cBioPortalRFPL3S
AceView (NCBI)RFPL3S
Genatlas (Paris)RFPL3S
WikiGenes10737
SOURCE (Princeton)RFPL3S
Genetics Home Reference (NIH)RFPL3S
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL3S  -     chr22:32359906-32371076 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL3S  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblRFPL3S - 22q12.3 [CytoView hg19]  RFPL3S - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIRFPL3S [Mapview hg19]  RFPL3S [Mapview hg38]
OMIM605971   
Gene and transcription
Genbank (Entrez)AJ010233 BC031635 BC042824 BC066983 BC090926
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL3S
Cluster EST : UnigeneHs.274285 [ NCBI ]
CGAP (NCI)Hs.274285
Alternative Splicing GalleryENSG00000205853
Gene ExpressionRFPL3S [ NCBI-GEO ]   RFPL3S [ EBI - ARRAY_EXPRESS ]   RFPL3S [ SEEK ]   RFPL3S [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL3S [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10737
GTEX Portal (Tissue expression)RFPL3S
Human Protein AtlasENSG00000205853-RFPL3S [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7P2
Splice isoforms : SwissVarP0C7P2
PhosPhoSitePlusP0C7P2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RFPL3S
DMDM Disease mutations10737
Blocks (Seattle)RFPL3S
SuperfamilyP0C7P2
Human Protein Atlas [tissue]ENSG00000205853-RFPL3S [tissue]
Peptide AtlasP0C7P2
IPIIPI00447397   IPI00514146   IPI00514072   IPI00827830   
Protein Interaction databases
DIP (DOE-UCLA)P0C7P2
IntAct (EBI)P0C7P2
FunCoupENSG00000205853
BioGRIDRFPL3S
STRING (EMBL)RFPL3S
ZODIACRFPL3S
Ontologies - Pathways
QuickGOP0C7P2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRFPL3S
Atlas of Cancer Signalling NetworkRFPL3S
Wikipedia pathwaysRFPL3S
Orthology - Evolution
OrthoDB10737
GeneTree (enSembl)ENSG00000205853
Phylogenetic Trees/Animal Genes : TreeFamRFPL3S
HOVERGENP0C7P2
HOGENOMP0C7P2
Homologs : HomoloGeneRFPL3S
Homology/Alignments : Family Browser (UCSC)RFPL3S
Gene fusions - Rearrangements
Fusion : QuiverRFPL3S
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL3S [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL3S
dbVarRFPL3S
ClinVarRFPL3S
1000_GenomesRFPL3S 
Exome Variant ServerRFPL3S
ExAC (Exome Aggregation Consortium)ENSG00000205853
GNOMAD BrowserENSG00000205853
Varsome BrowserRFPL3S
Genetic variants : HAPMAP10737
Genomic Variants (DGV)RFPL3S [DGVbeta]
DECIPHERRFPL3S [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL3S 
Mutations
ICGC Data PortalRFPL3S 
TCGA Data PortalRFPL3S 
Broad Tumor PortalRFPL3S
OASIS PortalRFPL3S [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRFPL3S
BioMutasearch RFPL3S
DgiDB (Drug Gene Interaction Database)RFPL3S
DoCM (Curated mutations)RFPL3S (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL3S (select a term)
intoGenRFPL3S
Cancer3DRFPL3S(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605971   
Orphanet
DisGeNETRFPL3S
MedgenRFPL3S
Genetic Testing Registry RFPL3S
NextProtP0C7P2 [Medical]
TSGene10737
GENETestsRFPL3S
Target ValidationRFPL3S
Huge Navigator RFPL3S [HugePedia]
snp3D : Map Gene to Disease10737
BioCentury BCIQRFPL3S
ClinGenRFPL3S
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10737
Chemical/Pharm GKB GenePA34350
Clinical trialRFPL3S
Miscellaneous
canSAR (ICR)RFPL3S (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL3S
EVEXRFPL3S
GoPubMedRFPL3S
iHOPRFPL3S
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:26:22 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.