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RFPL3S (RFPL3 antisense)

Identity

Alias (NCBI)NCRNA00005
RFPL3-AS
RFPL3-AS1
RFPL3ANT
RFPL3AS
HGNC (Hugo) RFPL3S
HGNC Alias symbRFPL3-AS
NCRNA00005
HGNC Alias namenon-protein coding RNA 5
HGNC Previous nameRFPL3-AS1
HGNC Previous nameRFPL3 antisense RNA 1
LocusID (NCBI) 10737
Atlas_Id 72594
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32359906 and ends at 32371264 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF721 (4p16.3) / RFPL3S (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(4;22)(p16;q12) ZNF721/RFPL3S

External links

Nomenclature
HGNC (Hugo)RFPL3S   9981
Cards
Entrez_Gene (NCBI)RFPL3S    RFPL3 antisense
AliasesNCRNA00005; RFPL3-AS; RFPL3-AS1; RFPL3ANT; 
RFPL3AS
GeneCards (Weizmann)RFPL3S
Ensembl hg19 (Hinxton)ENSG00000205853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205853 [Gene_View]  ENSG00000205853 [Sequence]  chr22:32359906-32371264 [Contig_View]  RFPL3S [Vega]
ICGC DataPortalENSG00000205853
TCGA cBioPortalRFPL3S
AceView (NCBI)RFPL3S
Genatlas (Paris)RFPL3S
SOURCE (Princeton)RFPL3S
Genetics Home Reference (NIH)RFPL3S
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL3S  -     chr22:32359906-32371264 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL3S  -     22q12.3   [Description]    (hg19-Feb_2009)
GoldenPathRFPL3S - 22q12.3 [CytoView hg19]  RFPL3S - 22q12.3 [CytoView hg38]
ImmunoBaseENSG00000205853
genome Data Viewer NCBIRFPL3S [Mapview hg19]  
OMIM605971   
Gene and transcription
Genbank (Entrez)AJ010233 BC031635 BC042824 BC066983 BC090926
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL3S
Alternative Splicing GalleryENSG00000205853
Gene ExpressionRFPL3S [ NCBI-GEO ]   RFPL3S [ EBI - ARRAY_EXPRESS ]   RFPL3S [ SEEK ]   RFPL3S [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL3S [ Firebrowse - Broad ]
GenevisibleExpression of RFPL3S in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10737
GTEX Portal (Tissue expression)RFPL3S
Human Protein AtlasENSG00000205853-RFPL3S [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7P2
Splice isoforms : SwissVarP0C7P2
PhosPhoSitePlusP0C7P2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RFPL3S
Blocks (Seattle)RFPL3S
SuperfamilyP0C7P2
Human Protein Atlas [tissue]ENSG00000205853-RFPL3S [tissue]
Peptide AtlasP0C7P2
IPIIPI00447397   IPI00514146   IPI00514072   IPI00827830   
Protein Interaction databases
DIP (DOE-UCLA)P0C7P2
IntAct (EBI)P0C7P2
BioGRIDRFPL3S
STRING (EMBL)RFPL3S
ZODIACRFPL3S
Ontologies - Pathways
QuickGOP0C7P2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRFPL3S
Atlas of Cancer Signalling NetworkRFPL3S
Wikipedia pathwaysRFPL3S
Orthology - Evolution
OrthoDB10737
GeneTree (enSembl)ENSG00000205853
Phylogenetic Trees/Animal Genes : TreeFamRFPL3S
HOGENOMP0C7P2
Homologs : HomoloGeneRFPL3S
Homology/Alignments : Family Browser (UCSC)RFPL3S
Gene fusions - Rearrangements
Fusion : QuiverRFPL3S
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL3S [hg38]
dbVarRFPL3S
ClinVarRFPL3S
MonarchRFPL3S
1000_GenomesRFPL3S 
Exome Variant ServerRFPL3S
GNOMAD BrowserENSG00000205853
Varsome BrowserRFPL3S
Genomic Variants (DGV)RFPL3S [DGVbeta]
DECIPHERRFPL3S [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL3S 
Mutations
ICGC Data PortalRFPL3S 
TCGA Data PortalRFPL3S 
Broad Tumor PortalRFPL3S
OASIS PortalRFPL3S [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRFPL3S
BioMutasearch RFPL3S
DgiDB (Drug Gene Interaction Database)RFPL3S
DoCM (Curated mutations)RFPL3S (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL3S (select a term)
intoGenRFPL3S
Cancer3DRFPL3S(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605971   
Orphanet
DisGeNETRFPL3S
MedgenRFPL3S
Genetic Testing Registry RFPL3S
NextProtP0C7P2 [Medical]
GENETestsRFPL3S
Target ValidationRFPL3S
Huge Navigator RFPL3S [HugePedia]
ClinGenRFPL3S
Clinical trials, drugs, therapy
MyCancerGenomeRFPL3S
Protein Interactions : CTD
Pharm GKB GenePA34350
Clinical trialRFPL3S
Miscellaneous
canSAR (ICR)RFPL3S (select the gene name)
HarmonizomeRFPL3S
DataMed IndexRFPL3S
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL3S
EVEXRFPL3S
GoPubMedRFPL3S
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:24:34 CET 2020
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