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RFPL4A (ret finger protein like 4A)

Identity

Alias_namesRFPL4
ret finger protein-like 4
Alias_symbol (synonym)RNF210
Other alias
HGNC (Hugo) RFPL4A
LocusID (NCBI) 342931
Atlas_Id 55264
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55759141 and ends at 55763175 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL4A   16449
Cards
Entrez_Gene (NCBI)RFPL4A  342931  ret finger protein like 4A
AliasesRFPL4; RNF210
GeneCards (Weizmann)RFPL4A
Ensembl hg19 (Hinxton)ENSG00000223638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223638 [Gene_View]  chr19:55759141-55763175 [Contig_View]  RFPL4A [Vega]
ICGC DataPortalENSG00000223638
TCGA cBioPortalRFPL4A
AceView (NCBI)RFPL4A
Genatlas (Paris)RFPL4A
WikiGenes342931
SOURCE (Princeton)RFPL4A
Genetics Home Reference (NIH)RFPL4A
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL4A  -     chr19:55759141-55763175 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL4A  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblRFPL4A - 19q13.42 [CytoView hg19]  RFPL4A - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIRFPL4A [Mapview hg19]  RFPL4A [Mapview hg38]
OMIM612601   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL4A
Cluster EST : UnigeneHs.631553 [ NCBI ]
CGAP (NCI)Hs.631553
Alternative Splicing GalleryENSG00000223638
Gene ExpressionRFPL4A [ NCBI-GEO ]   RFPL4A [ EBI - ARRAY_EXPRESS ]   RFPL4A [ SEEK ]   RFPL4A [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342931
GTEX Portal (Tissue expression)RFPL4A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLU0
Splice isoforms : SwissVarA6NLU0
PhosPhoSitePlusA6NLU0
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    RDM_domain_RFPL    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    RDM (PF11002)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam11002    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL4A
DMDM Disease mutations342931
Blocks (Seattle)RFPL4A
PDB (SRS)2FBE   
PDB (PDBSum)2FBE   
PDB (IMB)2FBE   
PDB (RSDB)2FBE   
Structural Biology KnowledgeBase2FBE   
SCOP (Structural Classification of Proteins)2FBE   
CATH (Classification of proteins structures)2FBE   
SuperfamilyA6NLU0
Human Protein AtlasENSG00000223638
Peptide AtlasA6NLU0
IPIIPI00888946   
Protein Interaction databases
DIP (DOE-UCLA)A6NLU0
IntAct (EBI)A6NLU0
FunCoupENSG00000223638
BioGRIDRFPL4A
STRING (EMBL)RFPL4A
ZODIACRFPL4A
Ontologies - Pathways
QuickGOA6NLU0
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRFPL4A
Atlas of Cancer Signalling NetworkRFPL4A
Wikipedia pathwaysRFPL4A
Orthology - Evolution
OrthoDB342931
GeneTree (enSembl)ENSG00000223638
Phylogenetic Trees/Animal Genes : TreeFamRFPL4A
HOVERGENA6NLU0
HOGENOMA6NLU0
Homologs : HomoloGeneRFPL4A
Homology/Alignments : Family Browser (UCSC)RFPL4A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL4A
dbVarRFPL4A
ClinVarRFPL4A
1000_GenomesRFPL4A 
Exome Variant ServerRFPL4A
ExAC (Exome Aggregation Consortium)RFPL4A (select the gene name)
Genetic variants : HAPMAP342931
Genomic Variants (DGV)RFPL4A [DGVbeta]
DECIPHERRFPL4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL4A 
Mutations
ICGC Data PortalRFPL4A 
TCGA Data PortalRFPL4A 
Broad Tumor PortalRFPL4A
OASIS PortalRFPL4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFPL4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFPL4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFPL4A
DgiDB (Drug Gene Interaction Database)RFPL4A
DoCM (Curated mutations)RFPL4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL4A (select a term)
intoGenRFPL4A
Cancer3DRFPL4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612601   
Orphanet
MedgenRFPL4A
Genetic Testing Registry RFPL4A
NextProtA6NLU0 [Medical]
TSGene342931
GENETestsRFPL4A
Target ValidationRFPL4A
Huge Navigator RFPL4A [HugePedia]
snp3D : Map Gene to Disease342931
BioCentury BCIQRFPL4A
ClinGenRFPL4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342931
Chemical/Pharm GKB GenePA162401186
Clinical trialRFPL4A
Miscellaneous
canSAR (ICR)RFPL4A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL4A
EVEXRFPL4A
GoPubMedRFPL4A
iHOPRFPL4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:03 CEST 2017

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