Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RFPL4AL1 (ret finger protein like 4A like 1)

Identity

Alias_namesret finger protein-like 4A-like 1
Other alias-
HGNC (Hugo) RFPL4AL1
LocusID (NCBI) 729974
Atlas_Id 72596
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55771805 and ends at 55773179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL4AL1   45147
Cards
Entrez_Gene (NCBI)RFPL4AL1  729974  ret finger protein like 4A like 1
Aliases
GeneCards (Weizmann)RFPL4AL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:55771805-55773179 [Contig_View]  RFPL4AL1 [Vega]
TCGA cBioPortalRFPL4AL1
AceView (NCBI)RFPL4AL1
Genatlas (Paris)RFPL4AL1
WikiGenes729974
SOURCE (Princeton)RFPL4AL1
Genetics Home Reference (NIH)RFPL4AL1
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL4AL1  -     chr19:55771805-55773179 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL4AL1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblRFPL4AL1 - 19q13.42 [CytoView hg19]  RFPL4AL1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIRFPL4AL1 [Mapview hg19]  RFPL4AL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001277397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL4AL1
Gene ExpressionRFPL4AL1 [ NCBI-GEO ]   RFPL4AL1 [ EBI - ARRAY_EXPRESS ]   RFPL4AL1 [ SEEK ]   RFPL4AL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL4AL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729974
GTEX Portal (Tissue expression)RFPL4AL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtF8VTS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF8VTS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF8VTS6
Splice isoforms : SwissVarF8VTS6
PhosPhoSitePlusF8VTS6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    RDM_domain_RFPL    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    RDM (PF11002)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam11002    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL4AL1
DMDM Disease mutations729974
Blocks (Seattle)RFPL4AL1
SuperfamilyF8VTS6
Peptide AtlasF8VTS6
Protein Interaction databases
DIP (DOE-UCLA)F8VTS6
IntAct (EBI)F8VTS6
BioGRIDRFPL4AL1
STRING (EMBL)RFPL4AL1
ZODIACRFPL4AL1
Ontologies - Pathways
QuickGOF8VTS6
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRFPL4AL1
Atlas of Cancer Signalling NetworkRFPL4AL1
Wikipedia pathwaysRFPL4AL1
Orthology - Evolution
OrthoDB729974
Phylogenetic Trees/Animal Genes : TreeFamRFPL4AL1
HOVERGENF8VTS6
HOGENOMF8VTS6
Homologs : HomoloGeneRFPL4AL1
Homology/Alignments : Family Browser (UCSC)RFPL4AL1
Gene fusions - Rearrangements
Fusion: Tumor Portal RFPL4AL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL4AL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL4AL1
dbVarRFPL4AL1
ClinVarRFPL4AL1
1000_GenomesRFPL4AL1 
Exome Variant ServerRFPL4AL1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP729974
Genomic Variants (DGV)RFPL4AL1 [DGVbeta]
DECIPHERRFPL4AL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL4AL1 
Mutations
ICGC Data PortalRFPL4AL1 
TCGA Data PortalRFPL4AL1 
Broad Tumor PortalRFPL4AL1
OASIS PortalRFPL4AL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRFPL4AL1
BioMutasearch RFPL4AL1
DgiDB (Drug Gene Interaction Database)RFPL4AL1
DoCM (Curated mutations)RFPL4AL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL4AL1 (select a term)
intoGenRFPL4AL1
Cancer3DRFPL4AL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRFPL4AL1
Genetic Testing Registry RFPL4AL1
NextProtF8VTS6 [Medical]
TSGene729974
GENETestsRFPL4AL1
Target ValidationRFPL4AL1
Huge Navigator RFPL4AL1 [HugePedia]
snp3D : Map Gene to Disease729974
BioCentury BCIQRFPL4AL1
ClinGenRFPL4AL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729974
Chemical/Pharm GKB GenePA166049157
Clinical trialRFPL4AL1
Miscellaneous
canSAR (ICR)RFPL4AL1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL4AL1
EVEXRFPL4AL1
GoPubMedRFPL4AL1
iHOPRFPL4AL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:24:45 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.