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RFPL4B (ret finger protein like 4B)

Identity

Alias_symbol (synonym)RNF211
Other alias
HGNC (Hugo) RFPL4B
LocusID (NCBI) 442247
Atlas_Id 72597
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 112347330 and ends at 112351296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFPL4B   33264
Cards
Entrez_Gene (NCBI)RFPL4B  442247  ret finger protein like 4B
AliasesRNF211
GeneCards (Weizmann)RFPL4B
Ensembl hg19 (Hinxton)ENSG00000251258 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251258 [Gene_View]  ENSG00000251258 [Sequence]  chr6:112347330-112351296 [Contig_View]  RFPL4B [Vega]
ICGC DataPortalENSG00000251258
TCGA cBioPortalRFPL4B
AceView (NCBI)RFPL4B
Genatlas (Paris)RFPL4B
WikiGenes442247
SOURCE (Princeton)RFPL4B
Genetics Home Reference (NIH)RFPL4B
Genomic and cartography
GoldenPath hg38 (UCSC)RFPL4B  -     chr6:112347330-112351296 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFPL4B  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblRFPL4B - 6q21 [CytoView hg19]  RFPL4B - 6q21 [CytoView hg38]
Mapping of homologs : NCBIRFPL4B [Mapview hg19]  RFPL4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122906 BC132796 BC132798 HQ258141
RefSeq transcript (Entrez)NM_001013734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFPL4B
Cluster EST : UnigeneHs.448264 [ NCBI ]
CGAP (NCI)Hs.448264
Alternative Splicing GalleryENSG00000251258
Gene ExpressionRFPL4B [ NCBI-GEO ]   RFPL4B [ EBI - ARRAY_EXPRESS ]   RFPL4B [ SEEK ]   RFPL4B [ MEM ]
Gene Expression Viewer (FireBrowse)RFPL4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442247
GTEX Portal (Tissue expression)RFPL4B
Human Protein AtlasENSG00000251258-RFPL4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZWI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZWI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZWI9
Splice isoforms : SwissVarQ6ZWI9
PhosPhoSitePlusQ6ZWI9
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)RFPL4B
DMDM Disease mutations442247
Blocks (Seattle)RFPL4B
SuperfamilyQ6ZWI9
Human Protein Atlas [tissue]ENSG00000251258-RFPL4B [tissue]
Peptide AtlasQ6ZWI9
HPRD18472
IPIIPI00419209   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZWI9
IntAct (EBI)Q6ZWI9
FunCoupENSG00000251258
BioGRIDRFPL4B
STRING (EMBL)RFPL4B
ZODIACRFPL4B
Ontologies - Pathways
QuickGOQ6ZWI9
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRFPL4B
Atlas of Cancer Signalling NetworkRFPL4B
Wikipedia pathwaysRFPL4B
Orthology - Evolution
OrthoDB442247
GeneTree (enSembl)ENSG00000251258
Phylogenetic Trees/Animal Genes : TreeFamRFPL4B
HOVERGENQ6ZWI9
HOGENOMQ6ZWI9
Homologs : HomoloGeneRFPL4B
Homology/Alignments : Family Browser (UCSC)RFPL4B
Gene fusions - Rearrangements
Fusion : QuiverRFPL4B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFPL4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFPL4B
dbVarRFPL4B
ClinVarRFPL4B
1000_GenomesRFPL4B 
Exome Variant ServerRFPL4B
ExAC (Exome Aggregation Consortium)ENSG00000251258
GNOMAD BrowserENSG00000251258
Varsome BrowserRFPL4B
Genetic variants : HAPMAP442247
Genomic Variants (DGV)RFPL4B [DGVbeta]
DECIPHERRFPL4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFPL4B 
Mutations
ICGC Data PortalRFPL4B 
TCGA Data PortalRFPL4B 
Broad Tumor PortalRFPL4B
OASIS PortalRFPL4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFPL4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFPL4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFPL4B
DgiDB (Drug Gene Interaction Database)RFPL4B
DoCM (Curated mutations)RFPL4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFPL4B (select a term)
intoGenRFPL4B
Cancer3DRFPL4B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRFPL4B
MedgenRFPL4B
Genetic Testing Registry RFPL4B
NextProtQ6ZWI9 [Medical]
TSGene442247
GENETestsRFPL4B
Target ValidationRFPL4B
Huge Navigator RFPL4B [HugePedia]
snp3D : Map Gene to Disease442247
BioCentury BCIQRFPL4B
ClinGenRFPL4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442247
Chemical/Pharm GKB GenePA162401195
Clinical trialRFPL4B
Miscellaneous
canSAR (ICR)RFPL4B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFPL4B
EVEXRFPL4B
GoPubMedRFPL4B
iHOPRFPL4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:26:23 CEST 2018

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