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RFT1 (RFT1 homolog)

Identity

Alias_namesRFT1, requiring fifty three 1 homolog (S. cerevisiae)
RFT1 homolog (S. cerevisiae)
Alias_symbol (synonym)CDG1N
Other alias
HGNC (Hugo) RFT1
LocusID (NCBI) 91869
Atlas_Id 54580
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 53088485 and ends at 53130454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAPK1 (22q11.21) / RFT1 (3p21.1)RFT1 (3p21.1) / UQCRC2 (16p12.2)SFMBT1 (3p21.1) / RFT1 (3p21.1)
SFMBT1 3p21.1 / RFT1 3p21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFT1   30220
Cards
Entrez_Gene (NCBI)RFT1  91869  RFT1 homolog
AliasesCDG1N
GeneCards (Weizmann)RFT1
Ensembl hg19 (Hinxton)ENSG00000163933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163933 [Gene_View]  chr3:53088485-53130454 [Contig_View]  RFT1 [Vega]
ICGC DataPortalENSG00000163933
TCGA cBioPortalRFT1
AceView (NCBI)RFT1
Genatlas (Paris)RFT1
WikiGenes91869
SOURCE (Princeton)RFT1
Genetics Home Reference (NIH)RFT1
Genomic and cartography
GoldenPath hg38 (UCSC)RFT1  -     chr3:53088485-53130454 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFT1  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblRFT1 - 3p21.1 [CytoView hg19]  RFT1 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBIRFT1 [Mapview hg19]  RFT1 [Mapview hg38]
OMIM611908   612015   
Gene and transcription
Genbank (Entrez)AJ318099 AK098811 AL713685 BC006846 BC043595
RefSeq transcript (Entrez)NM_052859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFT1
Cluster EST : UnigeneHs.631910 [ NCBI ]
CGAP (NCI)Hs.631910
Alternative Splicing GalleryENSG00000163933
Gene ExpressionRFT1 [ NCBI-GEO ]   RFT1 [ EBI - ARRAY_EXPRESS ]   RFT1 [ SEEK ]   RFT1 [ MEM ]
Gene Expression Viewer (FireBrowse)RFT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91869
GTEX Portal (Tissue expression)RFT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AA3
Splice isoforms : SwissVarQ96AA3
PhosPhoSitePlusQ96AA3
Domains : Interpro (EBI)RFT1   
Domain families : Pfam (Sanger)Rft-1 (PF04506)   
Domain families : Pfam (NCBI)pfam04506   
Conserved Domain (NCBI)RFT1
DMDM Disease mutations91869
Blocks (Seattle)RFT1
SuperfamilyQ96AA3
Human Protein AtlasENSG00000163933
Peptide AtlasQ96AA3
HPRD15239
IPIIPI00059368   IPI00167125   IPI00790053   IPI00945004   
Protein Interaction databases
DIP (DOE-UCLA)Q96AA3
IntAct (EBI)Q96AA3
FunCoupENSG00000163933
BioGRIDRFT1
STRING (EMBL)RFT1
ZODIACRFT1
Ontologies - Pathways
QuickGOQ96AA3
Ontology : AmiGOlipid transporter activity  endoplasmic reticulum membrane  carbohydrate transport  integral component of membrane  glycolipid translocation  
Ontology : EGO-EBIlipid transporter activity  endoplasmic reticulum membrane  carbohydrate transport  integral component of membrane  glycolipid translocation  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkRFT1
Atlas of Cancer Signalling NetworkRFT1
Wikipedia pathwaysRFT1
Orthology - Evolution
OrthoDB91869
GeneTree (enSembl)ENSG00000163933
Phylogenetic Trees/Animal Genes : TreeFamRFT1
HOVERGENQ96AA3
HOGENOMQ96AA3
Homologs : HomoloGeneRFT1
Homology/Alignments : Family Browser (UCSC)RFT1
Gene fusions - Rearrangements
Fusion : MitelmanRFT1/UQCRC2 [3p21.1/16p12.2]  
Fusion : MitelmanSFMBT1/RFT1 [3p21.1/3p21.1]  [t(3;3)(p21;p21)]  
Fusion: TCGASFMBT1 3p21.1 RFT1 3p21.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFT1
dbVarRFT1
ClinVarRFT1
1000_GenomesRFT1 
Exome Variant ServerRFT1
ExAC (Exome Aggregation Consortium)RFT1 (select the gene name)
Genetic variants : HAPMAP91869
Genomic Variants (DGV)RFT1 [DGVbeta]
DECIPHERRFT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFT1 
Mutations
ICGC Data PortalRFT1 
TCGA Data PortalRFT1 
Broad Tumor PortalRFT1
OASIS PortalRFT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RFT1
DgiDB (Drug Gene Interaction Database)RFT1
DoCM (Curated mutations)RFT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFT1 (select a term)
intoGenRFT1
Cancer3DRFT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611908    612015   
Orphanet19478   
MedgenRFT1
Genetic Testing Registry RFT1
NextProtQ96AA3 [Medical]
TSGene91869
GENETestsRFT1
Target ValidationRFT1
Huge Navigator RFT1 [HugePedia]
snp3D : Map Gene to Disease91869
BioCentury BCIQRFT1
ClinGenRFT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91869
Chemical/Pharm GKB GenePA134960002
Clinical trialRFT1
Miscellaneous
canSAR (ICR)RFT1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFT1
EVEXRFT1
GoPubMedRFT1
iHOPRFT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:04 CEST 2017

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