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RFTN2 (raftlin family member 2)

Identity

Alias_namesC2orf11
chromosome 2 open reading frame 11
Alias_symbol (synonym)FLJ30574
Raftlin-2
Other alias
HGNC (Hugo) RFTN2
LocusID (NCBI) 130132
Atlas_Id 72598
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 197570803 and ends at 197675860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FHIT (3p14.2) / RFTN2 (2q33.1)METTL8 (2q31.1) / RFTN2 (2q33.1)NFE2L2 (2q31.2) / RFTN2 (2q33.1)
PARD6G (18q23) / RFTN2 (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFTN2   26402
Cards
Entrez_Gene (NCBI)RFTN2  130132  raftlin family member 2
AliasesC2orf11; Raftlin-2
GeneCards (Weizmann)RFTN2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:197570803-197675860 [Contig_View]  RFTN2 [Vega]
TCGA cBioPortalRFTN2
AceView (NCBI)RFTN2
Genatlas (Paris)RFTN2
WikiGenes130132
SOURCE (Princeton)RFTN2
Genetics Home Reference (NIH)RFTN2
Genomic and cartography
GoldenPath hg38 (UCSC)RFTN2  -     chr2:197570803-197675860 -  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFTN2  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblRFTN2 - 2q33.1 [CytoView hg19]  RFTN2 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIRFTN2 [Mapview hg19]  RFTN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055136 AK090941 BC039690 BC093966 BC111069
RefSeq transcript (Entrez)NM_144629
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFTN2
Cluster EST : UnigeneHs.591615 [ NCBI ]
CGAP (NCI)Hs.591615
Gene ExpressionRFTN2 [ NCBI-GEO ]   RFTN2 [ EBI - ARRAY_EXPRESS ]   RFTN2 [ SEEK ]   RFTN2 [ MEM ]
Gene Expression Viewer (FireBrowse)RFTN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130132
GTEX Portal (Tissue expression)RFTN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LD8
Splice isoforms : SwissVarQ52LD8
PhosPhoSitePlusQ52LD8
Domains : Interpro (EBI)Raftlin   
Domain families : Pfam (Sanger)Raftlin (PF15250)   
Domain families : Pfam (NCBI)pfam15250   
Conserved Domain (NCBI)RFTN2
DMDM Disease mutations130132
Blocks (Seattle)RFTN2
SuperfamilyQ52LD8
Peptide AtlasQ52LD8
HPRD12805
IPIIPI00043747   IPI00916644   IPI00916387   
Protein Interaction databases
DIP (DOE-UCLA)Q52LD8
IntAct (EBI)Q52LD8
BioGRIDRFTN2
STRING (EMBL)RFTN2
ZODIACRFTN2
Ontologies - Pathways
QuickGOQ52LD8
Ontology : AmiGOcytoplasm  plasma membrane  protein transport into membrane raft  dsRNA transport  response to exogenous dsRNA  membrane raft  antigen receptor-mediated signaling pathway  
Ontology : EGO-EBIcytoplasm  plasma membrane  protein transport into membrane raft  dsRNA transport  response to exogenous dsRNA  membrane raft  antigen receptor-mediated signaling pathway  
NDEx NetworkRFTN2
Atlas of Cancer Signalling NetworkRFTN2
Wikipedia pathwaysRFTN2
Orthology - Evolution
OrthoDB130132
Phylogenetic Trees/Animal Genes : TreeFamRFTN2
HOVERGENQ52LD8
HOGENOMQ52LD8
Homologs : HomoloGeneRFTN2
Homology/Alignments : Family Browser (UCSC)RFTN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFTN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFTN2
dbVarRFTN2
ClinVarRFTN2
1000_GenomesRFTN2 
Exome Variant ServerRFTN2
ExAC (Exome Aggregation Consortium)RFTN2 (select the gene name)
Genetic variants : HAPMAP130132
Genomic Variants (DGV)RFTN2 [DGVbeta]
DECIPHERRFTN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFTN2 
Mutations
ICGC Data PortalRFTN2 
TCGA Data PortalRFTN2 
Broad Tumor PortalRFTN2
OASIS PortalRFTN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFTN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFTN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFTN2
DgiDB (Drug Gene Interaction Database)RFTN2
DoCM (Curated mutations)RFTN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFTN2 (select a term)
intoGenRFTN2
Cancer3DRFTN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRFTN2
Genetic Testing Registry RFTN2
NextProtQ52LD8 [Medical]
TSGene130132
GENETestsRFTN2
Target ValidationRFTN2
Huge Navigator RFTN2 [HugePedia]
snp3D : Map Gene to Disease130132
BioCentury BCIQRFTN2
ClinGenRFTN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130132
Chemical/Pharm GKB GenePA162401231
Clinical trialRFTN2
Miscellaneous
canSAR (ICR)RFTN2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFTN2
EVEXRFTN2
GoPubMedRFTN2
iHOPRFTN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:33 CEST 2017

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