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RFWD3 (ring finger and WD repeat domain 3)

Identity

Alias_symbol (synonym)FLJ10520
RNF201
Other alias
HGNC (Hugo) RFWD3
LocusID (NCBI) 55159
Atlas_Id 51515
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74621399 and ends at 74666881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD_1 () / RFWD3 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFWD3   25539
Cards
Entrez_Gene (NCBI)RFWD3  55159  ring finger and WD repeat domain 3
AliasesRNF201
GeneCards (Weizmann)RFWD3
Ensembl hg19 (Hinxton)ENSG00000168411 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168411 [Gene_View]  chr16:74621399-74666881 [Contig_View]  RFWD3 [Vega]
ICGC DataPortalENSG00000168411
TCGA cBioPortalRFWD3
AceView (NCBI)RFWD3
Genatlas (Paris)RFWD3
WikiGenes55159
SOURCE (Princeton)RFWD3
Genetics Home Reference (NIH)RFWD3
Genomic and cartography
GoldenPath hg38 (UCSC)RFWD3  -     chr16:74621399-74666881 -  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFWD3  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblRFWD3 - 16q23.1 [CytoView hg19]  RFWD3 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIRFWD3 [Mapview hg19]  RFWD3 [Mapview hg38]
OMIM614151   
Gene and transcription
Genbank (Entrez)AK001382 AK022673 AK291200 AK296727 AK315786
RefSeq transcript (Entrez)NM_018124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFWD3
Cluster EST : UnigeneHs.567525 [ NCBI ]
CGAP (NCI)Hs.567525
Alternative Splicing GalleryENSG00000168411
Gene ExpressionRFWD3 [ NCBI-GEO ]   RFWD3 [ EBI - ARRAY_EXPRESS ]   RFWD3 [ SEEK ]   RFWD3 [ MEM ]
Gene Expression Viewer (FireBrowse)RFWD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55159
GTEX Portal (Tissue expression)RFWD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCD5
Splice isoforms : SwissVarQ6PCD5
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ6PCD5
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  WD40 (SM00320)  
Conserved Domain (NCBI)RFWD3
DMDM Disease mutations55159
Blocks (Seattle)RFWD3
SuperfamilyQ6PCD5
Human Protein AtlasENSG00000168411
Peptide AtlasQ6PCD5
HPRD07678
IPIIPI00478737   IPI00910171   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCD5
IntAct (EBI)Q6PCD5
FunCoupENSG00000168411
BioGRIDRFWD3
STRING (EMBL)RFWD3
ZODIACRFWD3
Ontologies - Pathways
QuickGOQ6PCD5
Ontology : AmiGOp53 binding  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  DNA repair  zinc ion binding  response to ionizing radiation  protein ubiquitination  protein ubiquitination  PML body  mitotic G1 DNA damage checkpoint  site of double-strand break  MDM2/MDM4 family protein binding  regulation of DNA damage checkpoint  
Ontology : EGO-EBIp53 binding  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  DNA repair  zinc ion binding  response to ionizing radiation  protein ubiquitination  protein ubiquitination  PML body  mitotic G1 DNA damage checkpoint  site of double-strand break  MDM2/MDM4 family protein binding  regulation of DNA damage checkpoint  
NDEx NetworkRFWD3
Atlas of Cancer Signalling NetworkRFWD3
Wikipedia pathwaysRFWD3
Orthology - Evolution
OrthoDB55159
GeneTree (enSembl)ENSG00000168411
Phylogenetic Trees/Animal Genes : TreeFamRFWD3
HOVERGENQ6PCD5
HOGENOMQ6PCD5
Homologs : HomoloGeneRFWD3
Homology/Alignments : Family Browser (UCSC)RFWD3
Gene fusions - Rearrangements
Fusion Cancer (Beijing)AD_1 [RFWD3]  -  16q23.1 [FUSC000932]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFWD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFWD3
dbVarRFWD3
ClinVarRFWD3
1000_GenomesRFWD3 
Exome Variant ServerRFWD3
ExAC (Exome Aggregation Consortium)RFWD3 (select the gene name)
Genetic variants : HAPMAP55159
Genomic Variants (DGV)RFWD3 [DGVbeta]
DECIPHERRFWD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFWD3 
Mutations
ICGC Data PortalRFWD3 
TCGA Data PortalRFWD3 
Broad Tumor PortalRFWD3
OASIS PortalRFWD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFWD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFWD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFWD3
DgiDB (Drug Gene Interaction Database)RFWD3
DoCM (Curated mutations)RFWD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFWD3 (select a term)
intoGenRFWD3
Cancer3DRFWD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614151   
Orphanet
MedgenRFWD3
Genetic Testing Registry RFWD3
NextProtQ6PCD5 [Medical]
TSGene55159
GENETestsRFWD3
Target ValidationRFWD3
Huge Navigator RFWD3 [HugePedia]
snp3D : Map Gene to Disease55159
BioCentury BCIQRFWD3
ClinGenRFWD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55159
Chemical/Pharm GKB GenePA134960063
Clinical trialRFWD3
Miscellaneous
canSAR (ICR)RFWD3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFWD3
EVEXRFWD3
GoPubMedRFWD3
iHOPRFWD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:37 CEST 2017

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