Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RFX2 (regulatory factor X2)

Identity

Alias_namesregulatory factor X, 2 (influences HLA class II expression)
Alias_symbol (synonym)FLJ14226
Other alias-
HGNC (Hugo) RFX2
LocusID (NCBI) 5990
Atlas_Id 72599
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5993164 and ends at 6110653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RANBP3 (19p13.3) / RFX2 (19p13.3)RFX2 (19p13.3) / CCDC94 (19p13.3)RFX2 (19p13.3) / EPOR (19p13.2)
RFX2 (19p13.3) / RFX2 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFX2   9983
Cards
Entrez_Gene (NCBI)RFX2  5990  regulatory factor X2
Aliases
GeneCards (Weizmann)RFX2
Ensembl hg19 (Hinxton)ENSG00000087903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087903 [Gene_View]  chr19:5993164-6110653 [Contig_View]  RFX2 [Vega]
ICGC DataPortalENSG00000087903
TCGA cBioPortalRFX2
AceView (NCBI)RFX2
Genatlas (Paris)RFX2
WikiGenes5990
SOURCE (Princeton)RFX2
Genetics Home Reference (NIH)RFX2
Genomic and cartography
GoldenPath hg38 (UCSC)RFX2  -     chr19:5993164-6110653 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFX2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblRFX2 - 19p13.3 [CytoView hg19]  RFX2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIRFX2 [Mapview hg19]  RFX2 [Mapview hg38]
OMIM142765   
Gene and transcription
Genbank (Entrez)AI149945 AI863426 AK024288 AK093977 AK291196
RefSeq transcript (Entrez)NM_000635 NM_134433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFX2
Cluster EST : UnigeneHs.465709 [ NCBI ]
CGAP (NCI)Hs.465709
Alternative Splicing GalleryENSG00000087903
Gene ExpressionRFX2 [ NCBI-GEO ]   RFX2 [ EBI - ARRAY_EXPRESS ]   RFX2 [ SEEK ]   RFX2 [ MEM ]
Gene Expression Viewer (FireBrowse)RFX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5990
GTEX Portal (Tissue expression)RFX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48378   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48378  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48378
Splice isoforms : SwissVarP48378
PhosPhoSitePlusP48378
Domaine pattern : Prosite (Expaxy)RFX_DBD (PS51526)   
Domains : Interpro (EBI)DNA-bd_RFX    RFX1_trans_act    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)RFX1_trans_act (PF04589)    RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam04589    pfam02257   
Conserved Domain (NCBI)RFX2
DMDM Disease mutations5990
Blocks (Seattle)RFX2
SuperfamilyP48378
Human Protein AtlasENSG00000087903
Peptide AtlasP48378
HPRD00824
IPIIPI00298182   IPI00107801   IPI01014527   
Protein Interaction databases
DIP (DOE-UCLA)P48378
IntAct (EBI)P48378
FunCoupENSG00000087903
BioGRIDRFX2
STRING (EMBL)RFX2
ZODIACRFX2
Ontologies - Pathways
QuickGOP48378
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  acrosome assembly  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase II promoter  spermatid development  positive regulation of transcription from RNA polymerase II promoter  cilium assembly  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  acrosome assembly  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase II promoter  spermatid development  positive regulation of transcription from RNA polymerase II promoter  cilium assembly  
NDEx NetworkRFX2
Atlas of Cancer Signalling NetworkRFX2
Wikipedia pathwaysRFX2
Orthology - Evolution
OrthoDB5990
GeneTree (enSembl)ENSG00000087903
Phylogenetic Trees/Animal Genes : TreeFamRFX2
HOVERGENP48378
HOGENOMP48378
Homologs : HomoloGeneRFX2
Homology/Alignments : Family Browser (UCSC)RFX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFX2
dbVarRFX2
ClinVarRFX2
1000_GenomesRFX2 
Exome Variant ServerRFX2
ExAC (Exome Aggregation Consortium)RFX2 (select the gene name)
Genetic variants : HAPMAP5990
Genomic Variants (DGV)RFX2 [DGVbeta]
DECIPHERRFX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFX2 
Mutations
ICGC Data PortalRFX2 
TCGA Data PortalRFX2 
Broad Tumor PortalRFX2
OASIS PortalRFX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFX2
DgiDB (Drug Gene Interaction Database)RFX2
DoCM (Curated mutations)RFX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFX2 (select a term)
intoGenRFX2
Cancer3DRFX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142765   
Orphanet
MedgenRFX2
Genetic Testing Registry RFX2
NextProtP48378 [Medical]
TSGene5990
GENETestsRFX2
Target ValidationRFX2
Huge Navigator RFX2 [HugePedia]
snp3D : Map Gene to Disease5990
BioCentury BCIQRFX2
ClinGenRFX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5990
Chemical/Pharm GKB GenePA34353
Clinical trialRFX2
Miscellaneous
canSAR (ICR)RFX2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFX2
EVEXRFX2
GoPubMedRFX2
iHOPRFX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:38:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.