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RFX5 (regulatory factor X5)

Identity

Other alias-
HGNC (Hugo) RFX5
LocusID (NCBI) 5993
Atlas_Id 56872
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151340640 and ends at 151347293 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFX5   9986
Cards
Entrez_Gene (NCBI)RFX5  5993  regulatory factor X5
Aliases
GeneCards (Weizmann)RFX5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:151340640-151347293 [Contig_View]  RFX5 [Vega]
TCGA cBioPortalRFX5
AceView (NCBI)RFX5
Genatlas (Paris)RFX5
WikiGenes5993
SOURCE (Princeton)RFX5
Genetics Home Reference (NIH)RFX5
Genomic and cartography
GoldenPath hg38 (UCSC)/q>  -     chr1:151340640-151347293 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFX5  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblRFX5 - 1q21.3 [CytoView hg19]  RFX5 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIRFX5 [Mapview hg19]  RFX5 [Mapview hg38]
OMIM209920   601863   
Gene and transcription
Genbank (Entrez)AK223526 AK302891 AK309072 AK311525 AK312289
RefSeq transcript (Entrez)NM_000449 NM_001025603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFX5
Cluster EST : UnigeneHs.632472 [ NCBI ]
CGAP (NCI)Hs.632472
Gene ExpressionRFX5 [ NCBI-GEO ]   RFX5 [ EBI - ARRAY_EXPRESS ]   RFX5 [ SEEK ]   RFX5 [ MEM ]
Gene Expression Viewer (FireBrowse)RFX5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5993
GTEX Portal (Tissue expression)RFX5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48382   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48382  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48382
Splice isoforms : SwissVarP48382
PhosPhoSitePlusP48382
Domaine pattern : Prosite (Expaxy)RFX_DBD (PS51526)   
Domains : Interpro (EBI)DNA-bd_RFX    RFX5    RFX5_C    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)RFX5_DNA_bdg (PF14621)    RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam14621    pfam02257   
Domain families : Smart (EMBL)RFX5_DNA_bdg (SM01306)  
Conserved Domain (NCBI)RFX5
DMDM Disease mutations5993
Blocks (Seattle)RFX5
PDB (SRS)2KW3    3V30   
PDB (PDBSum)2KW3    3V30   
PDB (IMB)2KW3    3V30   
PDB (RSDB)2KW3    3V30   
Structural Biology KnowledgeBase2KW3    3V30   
SCOP (Structural Classification of Proteins)2KW3    3V30   
CATH (Classification of proteins structures)2KW3    3V30   
SuperfamilyP48382
Peptide AtlasP48382
IPIIPI00009303   IPI00852711   IPI00894289   IPI00644914   IPI00658194   IPI00658131   IPI01022724   IPI01008777   IPI00853280   IPI00853345   IPI00853148   IPI00974476   IPI00894536   IPI00892781   
Protein Interaction databases
DIP (DOE-UCLA)P48382
IntAct (EBI)P48382
BioGRIDRFX5
STRING (EMBL)RFX5
ZODIACRFX5
Ontologies - Pathways
QuickGOP48382
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGAntigen processing and presentation    Tuberculosis    Primary immunodeficiency   
NDEx NetworkRFX5
Atlas of Cancer Signalling NetworkRFX5
Wikipedia pathwaysRFX5
Orthology - Evolution
OrthoDB5993
Phylogenetic Trees/Animal Genes : TreeFamRFX5
HOVERGENP48382
HOGENOMP48382
Homologs : HomoloGeneRFX5
Homology/Alignments : Family Browser (UCSC)RFX5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFX5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFX5
dbVarRFX5
ClinVarRFX5
1000_GenomesRFX5 
Exome Variant ServerRFX5
ExAC (Exome Aggregation Consortium)RFX5 (select the gene name)
Genetic variants : HAPMAP5993
Genomic Variants (DGV)RFX5 [DGVbeta]
DECIPHERRFX5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFX5 
Mutations
ICGC Data PortalRFX5 
TCGA Data PortalRFX5 
Broad Tumor PortalRFX5
OASIS PortalRFX5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFX5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFX5
BioMutasearch RFX5
DgiDB (Drug Gene Interaction Database)RFX5
DoCM (Curated mutations)RFX5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFX5 (select a term)
intoGenRFX5
Cancer3DRFX5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM209920    601863   
Orphanet
MedgenRFX5
Genetic Testing Registry RFX5
NextProtP48382 [Medical]
TSGene5993
GENETestsRFX5
Target ValidationRFX5
Huge Navigator RFX5 [HugePedia]
snp3D : Map Gene to Disease5993
BioCentury BCIQRFX5
ClinGenRFX5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5993
Chemical/Pharm GKB GenePA34356
Clinical trialRFX5
Miscellaneous
canSAR (ICR)RFX5 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFX5
EVEXRFX5
GoPubMedRFX5
iHOPRFX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:42 CEST 2017

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