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RFX7 (regulatory factor X, 7)

Identity

Alias_namesRFXDC2
regulatory factor X domain containing 2
regulatory factor X, 7
Alias_symbol (synonym)FLJ12994
Other alias
HGNC (Hugo) RFX7
LocusID (NCBI) 64864
Atlas_Id 72604
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 56382731 and ends at 56535483 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DYX1C1 (15q21.3) / RFX7 (15q21.3)HN1 (17q25.1) / RFX7 (15q21.3)NEDD4 (15q21.3) / RFX7 (15q21.3)
RFX7 (15q21.3) / RFX7 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFX7   25777
Cards
Entrez_Gene (NCBI)RFX7  64864  regulatory factor X, 7
AliasesRFXDC2
GeneCards (Weizmann)RFX7
Ensembl hg19 (Hinxton) [Gene_View]  chr15:56382731-56535483 [Contig_View]  RFX7 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:56382731-56535483 [Contig_View]  RFX7 [Vega]
TCGA cBioPortalRFX7
AceView (NCBI)RFX7
Genatlas (Paris)RFX7
WikiGenes64864
SOURCE (Princeton)RFX7
Genetics Home Reference (NIH)RFX7
Genomic and cartography
GoldenPath hg19 (UCSC)RFX7  -     chr15:56382731-56535483 -  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFX7  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblRFX7 - 15q21.3 [CytoView hg19]  RFX7 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIRFX7 [Mapview hg19]  RFX7 [Mapview hg38]
OMIM612660   
Gene and transcription
Genbank (Entrez)AK023056 AK024757 AK126103 AK128045 AL832584
RefSeq transcript (Entrez)NM_022841
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)RFX7
Cluster EST : UnigeneHs.745089 [ NCBI ]
CGAP (NCI)Hs.745089
Gene ExpressionRFX7 [ NCBI-GEO ]   RFX7 [ EBI - ARRAY_EXPRESS ]   RFX7 [ SEEK ]   RFX7 [ MEM ]
Gene Expression Viewer (FireBrowse)RFX7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64864
GTEX Portal (Tissue expression)RFX7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2KHR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2KHR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2KHR2
Splice isoforms : SwissVarQ2KHR2
PhosPhoSitePlusQ2KHR2
Domaine pattern : Prosite (Expaxy)RFX_DBD (PS51526)   
Domains : Interpro (EBI)DNA-bd_RFX    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam02257   
Conserved Domain (NCBI)RFX7
DMDM Disease mutations64864
Blocks (Seattle)RFX7
PDB (SRS)4QQI    4QQM   
PDB (PDBSum)4QQI    4QQM   
PDB (IMB)4QQI    4QQM   
PDB (RSDB)4QQI    4QQM   
Structural Biology KnowledgeBase4QQI    4QQM   
SCOP (Structural Classification of Proteins)4QQI    4QQM   
CATH (Classification of proteins structures)4QQI    4QQM   
SuperfamilyQ2KHR2
Peptide AtlasQ2KHR2
HPRD07807
IPIIPI00896539   IPI00943243   IPI00640136   
Protein Interaction databases
DIP (DOE-UCLA)Q2KHR2
IntAct (EBI)Q2KHR2
BioGRIDRFX7
STRING (EMBL)RFX7
ZODIACRFX7
Ontologies - Pathways
QuickGOQ2KHR2
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkRFX7
Atlas of Cancer Signalling NetworkRFX7
Wikipedia pathwaysRFX7
Orthology - Evolution
OrthoDB64864
Phylogenetic Trees/Animal Genes : TreeFamRFX7
HOVERGENQ2KHR2
HOGENOMQ2KHR2
Homologs : HomoloGeneRFX7
Homology/Alignments : Family Browser (UCSC)RFX7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFX7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFX7
dbVarRFX7
ClinVarRFX7
1000_GenomesRFX7 
Exome Variant ServerRFX7
ExAC (Exome Aggregation Consortium)RFX7 (select the gene name)
Genetic variants : HAPMAP64864
Genomic Variants (DGV)RFX7 [DGVbeta]
DECIPHER (Syndromes)15:56382731-56535483  
CONAN: Copy Number AnalysisRFX7 
Mutations
ICGC Data PortalRFX7 
TCGA Data PortalRFX7 
Broad Tumor PortalRFX7
OASIS PortalRFX7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFX7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFX7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFX7
DgiDB (Drug Gene Interaction Database)RFX7
DoCM (Curated mutations)RFX7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFX7 (select a term)
intoGenRFX7
Cancer3DRFX7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612660   
Orphanet
MedgenRFX7
Genetic Testing Registry RFX7
NextProtQ2KHR2 [Medical]
TSGene64864
GENETestsRFX7
Huge Navigator RFX7 [HugePedia]
snp3D : Map Gene to Disease64864
BioCentury BCIQRFX7
ClinGenRFX7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64864
Chemical/Pharm GKB GenePA162401255
Clinical trialRFX7
Miscellaneous
canSAR (ICR)RFX7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFX7
EVEXRFX7
GoPubMedRFX7
iHOPRFX7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:57 CET 2017

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