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RFX8 (RFX family member 8, lacking RFX DNA binding domain)

Identity

Alias_namesregulatory factor X, 8
RFX gene family member 8, lacking RFX DNA binding domain
Alias_symbol (synonym)FLJ42986
Other alias-
HGNC (Hugo) RFX8
LocusID (NCBI) 731220
Atlas_Id 72605
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 101397361 and ends at 101474703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KDM3A (2p11.2) / RFX8 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFX8   37253
Cards
Entrez_Gene (NCBI)RFX8  731220  RFX family member 8, lacking RFX DNA binding domain
Aliases
GeneCards (Weizmann)RFX8
Ensembl hg19 (Hinxton)ENSG00000196460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196460 [Gene_View]  chr2:101397361-101474703 [Contig_View]  RFX8 [Vega]
ICGC DataPortalENSG00000196460
TCGA cBioPortalRFX8
AceView (NCBI)RFX8
Genatlas (Paris)RFX8
WikiGenes731220
SOURCE (Princeton)RFX8
Genetics Home Reference (NIH)RFX8
Genomic and cartography
GoldenPath hg38 (UCSC)RFX8  -     chr2:101397361-101474703 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RFX8  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblRFX8 - 2q11.2 [CytoView hg19]  RFX8 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIRFX8 [Mapview hg19]  RFX8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124976 AK131289 AK298610
RefSeq transcript (Entrez)NM_001145664 NM_207403
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RFX8
Cluster EST : UnigeneHs.662488 [ NCBI ]
CGAP (NCI)Hs.662488
Alternative Splicing GalleryENSG00000196460
Gene ExpressionRFX8 [ NCBI-GEO ]   RFX8 [ EBI - ARRAY_EXPRESS ]   RFX8 [ SEEK ]   RFX8 [ MEM ]
Gene Expression Viewer (FireBrowse)RFX8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)731220
GTEX Portal (Tissue expression)RFX8
Human Protein AtlasENSG00000196460-RFX8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV50
Splice isoforms : SwissVarQ6ZV50
PhosPhoSitePlusQ6ZV50
Domaine pattern : Prosite (Expaxy)RFX_DBD (PS51526)   
Domains : Interpro (EBI)DNA-bd_RFX    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam02257   
Conserved Domain (NCBI)RFX8
DMDM Disease mutations731220
Blocks (Seattle)RFX8
SuperfamilyQ6ZV50
Human Protein Atlas [tissue]ENSG00000196460-RFX8 [tissue]
Peptide AtlasQ6ZV50
IPIIPI00442271   IPI00807444   IPI00969022   IPI00965394   IPI00967961   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV50
IntAct (EBI)Q6ZV50
FunCoupENSG00000196460
BioGRIDRFX8
STRING (EMBL)RFX8
ZODIACRFX8
Ontologies - Pathways
QuickGOQ6ZV50
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkRFX8
Atlas of Cancer Signalling NetworkRFX8
Wikipedia pathwaysRFX8
Orthology - Evolution
OrthoDB731220
GeneTree (enSembl)ENSG00000196460
Phylogenetic Trees/Animal Genes : TreeFamRFX8
HOVERGENQ6ZV50
HOGENOMQ6ZV50
Homologs : HomoloGeneRFX8
Homology/Alignments : Family Browser (UCSC)RFX8
Gene fusions - Rearrangements
Tumor Fusion PortalRFX8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFX8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFX8
dbVarRFX8
ClinVarRFX8
1000_GenomesRFX8 
Exome Variant ServerRFX8
ExAC (Exome Aggregation Consortium)ENSG00000196460
GNOMAD BrowserENSG00000196460
Genetic variants : HAPMAP731220
Genomic Variants (DGV)RFX8 [DGVbeta]
DECIPHERRFX8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRFX8 
Mutations
ICGC Data PortalRFX8 
TCGA Data PortalRFX8 
Broad Tumor PortalRFX8
OASIS PortalRFX8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFX8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFX8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RFX8
DgiDB (Drug Gene Interaction Database)RFX8
DoCM (Curated mutations)RFX8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFX8 (select a term)
intoGenRFX8
Cancer3DRFX8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRFX8
MedgenRFX8
Genetic Testing Registry RFX8
NextProtQ6ZV50 [Medical]
TSGene731220
GENETestsRFX8
Target ValidationRFX8
Huge Navigator RFX8 [HugePedia]
snp3D : Map Gene to Disease731220
BioCentury BCIQRFX8
ClinGenRFX8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD731220
Chemical/Pharm GKB GenePA165697419
Clinical trialRFX8
Miscellaneous
canSAR (ICR)RFX8 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFX8
EVEXRFX8
GoPubMedRFX8
iHOPRFX8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:09:36 CET 2017

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