Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RFXANK (regulatory factor X associated ankyrin containing protein)

Identity

Alias_namesregulatory factor X-associated ankyrin-containing protein
Alias_symbol (synonym)BLS
RFX-B
ANKRA1
F14150_1
MGC138628
Other alias
HGNC (Hugo) RFXANK
LocusID (NCBI) 8625
Atlas_Id 46148
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19303008 and ends at 19312678 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RFXANK   9987
LRG (Locus Reference Genomic)LRG_102
Cards
Entrez_Gene (NCBI)RFXANK  8625  regulatory factor X associated ankyrin containing protein
AliasesANKRA1; BLS; F14150_1; RFX-B
GeneCards (Weizmann)RFXANK
Ensembl hg19 (Hinxton)ENSG00000064490 [Gene_View]  chr19:19303008-19312678 [Contig_View]  RFXANK [Vega]
Ensembl hg38 (Hinxton)ENSG00000064490 [Gene_View]  chr19:19303008-19312678 [Contig_View]  RFXANK [Vega]
ICGC DataPortalENSG00000064490
TCGA cBioPortalRFXANK
AceView (NCBI)RFXANK
Genatlas (Paris)RFXANK
WikiGenes8625
SOURCE (Princeton)RFXANK
Genetics Home Reference (NIH)RFXANK
Genomic and cartography
GoldenPath hg19 (UCSC)RFXANK  -     chr19:19303008-19312678 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RFXANK  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblRFXANK - 19p13.11 [CytoView hg19]  RFXANK - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIRFXANK [Mapview hg19]  RFXANK [Mapview hg38]
OMIM209920   603200   
Gene and transcription
Genbank (Entrez)AF077196 AF094760 AF105427 AF105428 AW411190
RefSeq transcript (Entrez)NM_001278727 NM_001278728 NM_003721 NM_134440
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007432 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)RFXANK
Cluster EST : UnigeneHs.296776 [ NCBI ]
CGAP (NCI)Hs.296776
Alternative Splicing GalleryENSG00000064490
Gene ExpressionRFXANK [ NCBI-GEO ]   RFXANK [ EBI - ARRAY_EXPRESS ]   RFXANK [ SEEK ]   RFXANK [ MEM ]
Gene Expression Viewer (FireBrowse)RFXANK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8625
GTEX Portal (Tissue expression)RFXANK
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14593   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14593  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14593
Splice isoforms : SwissVarO14593
PhosPhoSitePlusO14593
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    DNA-bd_RFXANK   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)RFXANK
DMDM Disease mutations8625
Blocks (Seattle)RFXANK
PDB (SRS)3UXG    3V30    4QQM   
PDB (PDBSum)3UXG    3V30    4QQM   
PDB (IMB)3UXG    3V30    4QQM   
PDB (RSDB)3UXG    3V30    4QQM   
Structural Biology KnowledgeBase3UXG    3V30    4QQM   
SCOP (Structural Classification of Proteins)3UXG    3V30    4QQM   
CATH (Classification of proteins structures)3UXG    3V30    4QQM   
SuperfamilyO14593
Human Protein AtlasENSG00000064490
Peptide AtlasO14593
HPRD04435
IPIIPI00022520   IPI00939590   IPI01012414   IPI00220485   IPI01010065   IPI01010533   IPI01014839   IPI01015330   IPI01014490   IPI01013295   IPI01013644   
Protein Interaction databases
DIP (DOE-UCLA)O14593
IntAct (EBI)O14593
FunCoupENSG00000064490
BioGRIDRFXANK
STRING (EMBL)RFXANK
ZODIACRFXANK
Ontologies - Pathways
QuickGOO14593
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  transcription cofactor activity  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  Ras protein signal transduction  histone deacetylase binding  intercellular bridge  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  transcription cofactor activity  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  Ras protein signal transduction  histone deacetylase binding  intercellular bridge  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGAntigen processing and presentation    Tuberculosis    Primary immunodeficiency   
NDEx NetworkRFXANK
Atlas of Cancer Signalling NetworkRFXANK
Wikipedia pathwaysRFXANK
Orthology - Evolution
OrthoDB8625
GeneTree (enSembl)ENSG00000064490
Phylogenetic Trees/Animal Genes : TreeFamRFXANK
HOVERGENO14593
HOGENOMO14593
Homologs : HomoloGeneRFXANK
Homology/Alignments : Family Browser (UCSC)RFXANK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRFXANK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RFXANK
dbVarRFXANK
ClinVarRFXANK
1000_GenomesRFXANK 
Exome Variant ServerRFXANK
ExAC (Exome Aggregation Consortium)RFXANK (select the gene name)
Genetic variants : HAPMAP8625
Genomic Variants (DGV)RFXANK [DGVbeta]
DECIPHER (Syndromes)19:19303008-19312678  ENSG00000064490
CONAN: Copy Number AnalysisRFXANK 
Mutations
ICGC Data PortalRFXANK 
TCGA Data PortalRFXANK 
Broad Tumor PortalRFXANK
OASIS PortalRFXANK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRFXANK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRFXANK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch RFXANK
DgiDB (Drug Gene Interaction Database)RFXANK
DoCM (Curated mutations)RFXANK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RFXANK (select a term)
intoGenRFXANK
Cancer3DRFXANK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM209920    603200   
Orphanet3279   
MedgenRFXANK
Genetic Testing Registry RFXANK
NextProtO14593 [Medical]
TSGene8625
GENETestsRFXANK
Huge Navigator RFXANK [HugePedia]
snp3D : Map Gene to Disease8625
BioCentury BCIQRFXANK
ClinGenRFXANK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8625
Chemical/Pharm GKB GenePA34357
Clinical trialRFXANK
Miscellaneous
canSAR (ICR)RFXANK (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRFXANK
EVEXRFXANK
GoPubMedRFXANK
iHOPRFXANK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:17:18 CEST 2017

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