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RGAG1 (retrotransposon gag domain containing 1)

Identity

Alias_symbol (synonym)KIAA1318
Mart9
Mar9
Other aliasMAR9
MART9
HGNC (Hugo) RGAG1
LocusID (NCBI) 57529
Atlas_Id 72607
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 109662285 and ends at 109699562 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COL4A5 (Xq22.3) / RGAG1 (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGAG1   29245
Cards
Entrez_Gene (NCBI)RGAG1  57529  retrotransposon gag domain containing 1
AliasesMAR9; MART9
GeneCards (Weizmann)RGAG1
Ensembl hg19 (Hinxton)ENSG00000243978 [Gene_View]  chrX:109662285-109699562 [Contig_View]  RGAG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243978 [Gene_View]  chrX:109662285-109699562 [Contig_View]  RGAG1 [Vega]
ICGC DataPortalENSG00000243978
TCGA cBioPortalRGAG1
AceView (NCBI)RGAG1
Genatlas (Paris)RGAG1
WikiGenes57529
SOURCE (Princeton)RGAG1
Genetics Home Reference (NIH)RGAG1
Genomic and cartography
GoldenPath hg19 (UCSC)RGAG1  -     chrX:109662285-109699562 +  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGAG1  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblRGAG1 - Xq23 [CytoView hg19]  RGAG1 - Xq23 [CytoView hg38]
Mapping of homologs : NCBIRGAG1 [Mapview hg19]  RGAG1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037739 AK302427 AY121804 BC113670 BC117184
RefSeq transcript (Entrez)NM_020769
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016402 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)RGAG1
Cluster EST : UnigeneHs.201071 [ NCBI ]
CGAP (NCI)Hs.201071
Alternative Splicing GalleryENSG00000243978
Gene ExpressionRGAG1 [ NCBI-GEO ]   RGAG1 [ EBI - ARRAY_EXPRESS ]   RGAG1 [ SEEK ]   RGAG1 [ MEM ]
Gene Expression Viewer (FireBrowse)RGAG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57529
GTEX Portal (Tissue expression)RGAG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET4
Splice isoforms : SwissVarQ8NET4
PhosPhoSitePlusQ8NET4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RGAG1
DMDM Disease mutations57529
Blocks (Seattle)RGAG1
SuperfamilyQ8NET4
Human Protein AtlasENSG00000243978
Peptide AtlasQ8NET4
HPRD06600
IPIIPI00514462   IPI01015251   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET4
IntAct (EBI)Q8NET4
FunCoupENSG00000243978
BioGRIDRGAG1
STRING (EMBL)RGAG1
ZODIACRGAG1
Ontologies - Pathways
QuickGOQ8NET4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRGAG1
Atlas of Cancer Signalling NetworkRGAG1
Wikipedia pathwaysRGAG1
Orthology - Evolution
OrthoDB57529
GeneTree (enSembl)ENSG00000243978
Phylogenetic Trees/Animal Genes : TreeFamRGAG1
HOVERGENQ8NET4
HOGENOMQ8NET4
Homologs : HomoloGeneRGAG1
Homology/Alignments : Family Browser (UCSC)RGAG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGAG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGAG1
dbVarRGAG1
ClinVarRGAG1
1000_GenomesRGAG1 
Exome Variant ServerRGAG1
ExAC (Exome Aggregation Consortium)RGAG1 (select the gene name)
Genetic variants : HAPMAP57529
Genomic Variants (DGV)RGAG1 [DGVbeta]
DECIPHER (Syndromes)X:109662285-109699562  ENSG00000243978
CONAN: Copy Number AnalysisRGAG1 
Mutations
ICGC Data PortalRGAG1 
TCGA Data PortalRGAG1 
Broad Tumor PortalRGAG1
OASIS PortalRGAG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGAG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGAG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RGAG1
DgiDB (Drug Gene Interaction Database)RGAG1
DoCM (Curated mutations)RGAG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGAG1 (select a term)
intoGenRGAG1
Cancer3DRGAG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRGAG1
Genetic Testing Registry RGAG1
NextProtQ8NET4 [Medical]
TSGene57529
GENETestsRGAG1
Huge Navigator RGAG1 [HugePedia]
snp3D : Map Gene to Disease57529
BioCentury BCIQRGAG1
ClinGenRGAG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57529
Chemical/Pharm GKB GenePA134934891
Clinical trialRGAG1
Miscellaneous
canSAR (ICR)RGAG1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGAG1
EVEXRGAG1
GoPubMedRGAG1
iHOPRGAG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:40:58 CET 2017

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